FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7335, 1020 aa
  1>>>pF1KB7335 1020 - 1020 aa - 1020 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0322+/-0.000773; mu= 18.6808+/- 0.047
 mean_var=86.5190+/-17.375, 0's: 0 Z-trim(110.0): 7  B-trim: 27 in 1/49
 Lambda= 0.137885
 statistics sampled from 11275 (11280) to 11275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.347), width:  16
 Scan time:  5.200

The best scores are:                                      opt bits E(32554)
CCDS30694.2 SZT2 gene_id:23334|Hs108|chr1          (3375) 6870 1377.2       0


>>CCDS30694.2 SZT2 gene_id:23334|Hs108|chr1               (3375 aa)
 initn: 6870 init1: 6870 opt: 6870  Z-score: 7371.4  bits: 1377.2 E(32554):    0
Smith-Waterman score: 6870; 99.8% identity (99.9% similar) in 1018 aa overlap (1-1018:1-1018)

               10        20        30        40        50        60
pF1KB7 MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQATPQEMLLQSEQELEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQATPQEMLLQSEQELEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VFHALSRCLGGLLRPFRVPGSCIDFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VFHALSRCLGGLLRPFRVPGSCIDFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VFLQQIYEQLCLFEDKVATMLQQQYDPQSQAEDQSPDSGDLLGRKVGVSMVTADLGLVSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VFLQQIYEQLCLFEDKVATMLQQQYDPQSQAEDQSPDSGDLLGRKVGVSMVTADLGLVSM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 IRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVGGVYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVGGVYSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 DCSFGHVPNVELMKFIAMATFGSYLSTCPEPEPGNLGLTVYHRAFLLYSFLRSGEALNPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DCSFGHVPNVELMKFIAMATFGSYLSTCPEPEPGNLGLTVYHRAFLLYSFLRSGEALNPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YYCGSQHRLFNEHLVSASSNPALALRRKKHTEKEVPADLVSTVSVRLREGYSVREVTLAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YYCGSQHRLFNEHLVSASSNPALALRRKKHTEKEVPADLVSTVSVRLREGYSVREVTLAK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GGSQLEVKLVLLWKHNMRIEYVAMAPWPLEPEGPRVTRVEVTMEGGYDILHDVSCALRQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GGSQLEVKLVLLWKHNMRIEYVAMAPWPLEPEGPRVTRVEVTMEGGYDILHDVSCALRQP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 IRSLYRTHVIRRFWNTLQSINQTDQMLAHLQSFSSVPEHFTLPDSTKSGVPLFYIPPGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IRSLYRTHVIRRFWNTLQSINQTDQMLAHLQSFSSVPEHFTLPDSTKSGVPLFYIPPGST
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 TPVLSLQPSGSDSSHAQFAAYWKPVLSMDANSWQRWLHMHRLVLILEHDTPIPKHLHTPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TPVLSLQPSGSDSSHAQFAAYWKPVLSMDANSWQRWLHMHRLVLILEHDTPIPKHLHTPG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 SNGRYSTIQCRISHSSLTSLLRDWSSFVLVEGYSYVKLLSSAPDQPPNSFYMVRIISKAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SNGRYSTIQCRISHSSLTSLLRDWSSFVLVEGYSYVKLLSSAPDQPPNSFYMVRIISKAP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB7 CMVLRLGFPIGTPAPARHKIVSGLREEILRLRFPHRVQSKEPTPKVKRKGLGGAGGGSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 CMVLRLGFPIGTPAPARHKIVSGLREEILRLRFPHRVQSKEPTPKVKRKGLGGAGGGSSP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB7 SKSPPVLGPQQALSDRPCLVVLHKPLDKLLIRYEKLPLDYRAPFLLTLEPPGPLPLVSGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SKSPPVLGPQQALSDRPCLVVLHKPLDKLLIRYEKLPLDYRAPFLLTLEPPGPLPLVSGR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB7 SASSSLASLSRYLYHQRWLWSVPSGLAPALPLSAIAQLLSILTEVRLSEGFHFACSGEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SASSSLASLSRYLYHQRWLWSVPSGLAPALPLSAIAQLLSILTEVRLSEGFHFACSGEGI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB7 INMVLELPIQNEPPGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 INMVLELPIQNEPPGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB7 ELNLVTEVWVEPQYGRVGPGPGIWKHLQDLTYSEIPQALHPRDAACIGSMLSFEYLIQLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ELNLVTEVWVEPQYGRVGPGPGIWKHLQDLTYSEIPQALHPRDAACIGSMLSFEYLIQLC
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB7 QSKEWGPLPPEPRVSDGLDQGGDTCVHEIPFHFDLMGLLPQCQQLQMFFLLLARAAWGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.: :  
CCDS30 QSKEWGPLPPEPRVSDGLDQGGDTCVHEIPFHFDLMGLLPQCQQLQMFFLLLARGAEGPL
              970       980       990      1000      1010      1020

CCDS30 LGVHGIPKEQAVGSTQATGDSAFTSLSVGLPETLKPLISAQPPQWRCYARLVNPQHVFLT
             1030      1040      1050      1060      1070      1080




1020 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:47:13 2016 done: Sat Nov  5 08:47:14 2016
 Total Scan time:  5.200 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]