Result of FASTA (ccds) for
pF1KB7329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7329, 900 aa
1>>>pF1KB7329 900 - 900 aa - 900 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3842+/-0.000913; mu= 12.0626+/- 0.056
mean_var=110.2730+/-22.304, 0's: 0 Z-trim(109.3): 3 B-trim: 386 in 1/51
Lambda= 0.122135
statistics sampled from 10826 (10828) to 10826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.333), width: 16
Scan time: 3.810
The best scores are: opt bits E(32554)
CCDS3360.1 POLN gene_id:353497|Hs108|chr4 ( 900) 5928 1055.6 0
CCDS33833.1 POLQ gene_id:10721|Hs108|chr3 (2590) 477 95.3 1.6e-18
>>CCDS3360.1 POLN gene_id:353497|Hs108|chr4 (900 aa)
initn: 5928 init1: 5928 opt: 5928 Z-score: 5644.4 bits: 1055.6 E(32554): 0
Smith-Waterman score: 5928; 100.0% identity (100.0% similar) in 900 aa overlap (1-900:1-900)
10 20 30 40 50 60
pF1KB7 MENYEALVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTETMEVINKSSVKYSVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MENYEALVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTETMEVINKSSVKYSVQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EDRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKHITYNNLSEKTSKQMALEEDTDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKHITYNNLSEKTSKQMALEEDTDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AEGYLNSGNSGALKKHFCDIRHLDDWAKSQLIEMLKQAAALVITVMYTDGSTQLGADQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AEGYLNSGNSGALKKHFCDIRHLDDWAKSQLIEMLKQAAALVITVMYTDGSTQLGADQTP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 VSSVRGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VSSVRGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 FARNVLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FARNVLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 ATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 WQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 NNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 IKSTFVDGLLACMKKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IKSTFVDGLLACMKKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKED
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 KILTISPRAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KILTISPRAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 WKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 FARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 IHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 PLKVSLSAGRSWGHLVPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPSFCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PLKVSLSAGRSWGHLVPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPSFCL
850 860 870 880 890 900
>>CCDS33833.1 POLQ gene_id:10721|Hs108|chr3 (2590 aa)
initn: 947 init1: 357 opt: 477 Z-score: 446.1 bits: 95.3 E(32554): 1.6e-18
Smith-Waterman score: 785; 29.7% identity (58.5% similar) in 607 aa overlap (348-855:1988-2585)
320 330 340 350 360 370
pF1KB7 CFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKYCEKSI
::..: ::.::.. :.....: .. . .
CCDS33 KECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHEL
1960 1970 1980 1990 2000 2010
380 390 400 410 420
pF1KB7 TV--KVNSTYGNSSRNIVNQN-----VRENLKTLYRL-TMD-LCSKLKDYGLWQLFRTLE
. .... : .: .. . : ..... . .:. : : :. .: ..:: .:
CCDS33 PLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVE
2020 2030 2040 2050 2060 2070
430 440 450 460 470 480
pF1KB7 LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREIL
.: ::..: ..: . : :. . .. :.: .: .:. .::. : .::.... :.:
CCDS33 MPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVL
2080 2090 2100 2110 2120 2130
490 500 510 520 530
pF1KB7 FGKLKL----HLLSQ--RNSL--PRTG--------LQKYPSTSEAVLNALRDLHPLPKII
: .::: .. .: ...: : : : . :::. ::: :. ::::: .:
CCDS33 FLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLI
2140 2150 2160 2170 2180 2190
540 550 560 570 580
pF1KB7 LEYRQVHKIKSTFVDGLL--ACMKKG-SISSTW--NQTGTVTGRLSAKHPNIQGIS----
::.:.. . . : : :.. .. . .:. :.:::.. .::::..
CCDS33 LEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFE
2200 2210 2220 2230 2240 2250
590 600 610
pF1KB7 -KHPIQI--TTPKNF---------KGKEDKILTISPRAM---------------------
: : . . :.. .:: : ....:: .
CCDS33 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA
2260 2270 2280 2290 2300 2310
620 630 640 650 660 670
pF1KB7 FVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVT
:: : ..::::.::.:::::.::: : .:..... . ::: .....:: . :.:
CCDS33 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGA--DVFRSIAAEWKMIEPESVG
2320 2330 2340 2350 2360 2370
680 690 700 710 720 730
pF1KB7 HADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCH
:.:.:.. :...:: : . :. .:. ..:: ...:: ..: :..: .. .:.
CCDS33 DDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCK
2380 2390 2400 2410 2420 2430
740 750 760 770 780
pF1KB7 QTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHV------F
. : : .:.:::: :: :. .. .:.:::::.: .:::::::. :.: ... :
CCDS33 RDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETF
2440 2450 2460 2470 2480 2490
790 800 810
pF1KB7 TAVAASH-----------TLTAR---------------LVAQIHDELLFEVEDPQIPECA
.. :: : .: .. :.:::::.:: . .. . :
CCDS33 HSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVA
2500 2510 2520 2530 2540 2550
820 830 840 850 860 870
pF1KB7 ALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWGHLVPLQEAWGPPPGPCRTESPSNSL
.:. ::: ..:.: :::... : :::.:
CCDS33 QIVKNEMES-------AVKLSVKLKVKVKIGASWGELKDFDV
2560 2570 2580 2590
880 890 900
pF1KB7 AAPGSPASTQPPPLHFSPSFCL
900 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:43:21 2016 done: Sat Nov 5 08:43:22 2016
Total Scan time: 3.810 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]