Result of FASTA (ccds) for
pF1KB7310
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7310, 1608 aa
1>>>pF1KB7310 1608 - 1608 aa - 1608 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.9146+/-0.00118; mu= -11.6545+/- 0.072
mean_var=624.8641+/-130.023, 0's: 0 Z-trim(117.3): 107 B-trim: 488 in 1/53
Lambda= 0.051308
statistics sampled from 17916 (18021) to 17916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.554), width: 16
Scan time: 7.960
The best scores are: opt bits E(32554)
CCDS12601.1 CIC gene_id:23152|Hs108|chr19 (1608) 10963 827.7 0
>>CCDS12601.1 CIC gene_id:23152|Hs108|chr19 (1608 aa)
initn: 10963 init1: 10963 opt: 10963 Z-score: 4403.9 bits: 827.7 E(32554): 0
Smith-Waterman score: 10963; 100.0% identity (100.0% similar) in 1608 aa overlap (1-1608:1-1608)
10 20 30 40 50 60
pF1KB7 MYSAHRPLMPASSAASRGLGMFVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MYSAHRPLMPASSAASRGLGMFVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PASHPVASNQSKEPAESAAVAHERPPGGTGSADPERPPGATCPESPGPGPPHPLGVVESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PASHPVASNQSKEPAESAAVAHERPPGGTGSADPERPPGATCPESPGPGPPHPLGVVESG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KGPPPTTEEEASGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KGPPPTTEEEASGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 SETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSSSCGAERLHTVGGPGSARPRAFSHSGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSSSCGAERLHTVGGPGSARPRAFSHSGV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 HSLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPFAAPGEGGALAATGRPPLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HSLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPFAAPGEGGALAATGRPPLLP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 TRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGTTDIDLKCKERVTDSESGDSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFGTTDIDLKCKERVTDSESGDSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 GEDPEGNKGFGRKVFSPVIRSSFTHCRPPLDPEPPGPPDPPVAFGKGYGSAPSSSASSPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GEDPEGNKGFGRKVFSPVIRSSFTHCRPPLDPEPPGPPDPPVAFGKGYGSAPSSSASSPA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 SSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPPPGAGGPATPSKATRFLPMDPATFRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPPPGAGGPATPSKATRFLPMDPATFRR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 KRPESVGGLEPPGPSVIAAPPSGGGNILQTLVLPPNKEEQEGGGARVPSAPAPSLAYGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KRPESVGGLEPPGPSVIAAPPSGGGNILQTLVLPPNKEEQEGGGARVPSAPAPSLAYGAP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 AAPLSRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEASPNDTAGARTEMGTGSRVPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAPLSRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEASPNDTAGARTEMGTGSRVPGG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 SPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPAPPAVQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPLGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPAPPAVQF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 IAQGAPGGGTTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IAQGAPGGGTTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 APAPAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APAPAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB7 QSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QSVSPVQAPPPGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB7 SKIIQLTPVPVSTPSGLVPPLSPATLPGPTSQPQKVLLPSSTRITYVQSAGGHALPLGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SKIIQLTPVPVSTPSGLVPPLSPATLPGPTSQPQKVLLPSSTRITYVQSAGGHALPLGTS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB7 PASSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQVGVSPVPSPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PASSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQVGVSPVPSPQL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB7 PPACAAPGGPVITAFYSGSPAPTSSAPLAQPSQAPPSLVYTVATSTTPPAATILPKGPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPACAAPGGPVITAFYSGSPAPTSSAPLAQPSQAPPSLVYTVATSTTPPAATILPKGPPA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB7 PATATPAPTSPFPSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PATATPAPTSPFPSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRP
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB7 GPAPRQPLEPGPVREPTAPESELEGQPTPPAPPPLPETWTPTARSSPPLPPPAEERTSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPAPRQPLEPGPVREPTAPESELEGQPTPPAPPPLPETWTPTARSSPPLPPPAEERTSAK
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB7 GPETMASKFPSSSSDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAGDTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPETMASKFPSSSSDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAGDTPE
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB7 RKEAAGTGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RKEAAGTGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLA
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB7 TSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFD
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KB7 RTGTEAEDVLGELEYDKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTGTEAEDVLGELEYDKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYADI
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KB7 FPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPVPPPTGTAAAPAPTPSPAGGPDPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPVPPPTGTAAAPAPTPSPAGGPDPT
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600
pF1KB7 SPSSDSGTAQAAPPLPPPPESGPGQPGWEGAPQPSPPPPGPSTAATGR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPSSDSGTAQAAPPLPPPPESGPGQPGWEGAPQPSPPPPGPSTAATGR
1570 1580 1590 1600
1608 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:33:07 2016 done: Sat Nov 5 08:33:08 2016
Total Scan time: 7.960 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]