FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7303, 1288 aa
  1>>>pF1KB7303 1288 - 1288 aa - 1288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3518+/-0.00085; mu= 19.1116+/- 0.052
 mean_var=94.7217+/-19.179, 0's: 0 Z-trim(109.2): 2  B-trim: 90 in 1/51
 Lambda= 0.131780
 statistics sampled from 10746 (10748) to 10746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.33), width:  16
 Scan time:  5.850

The best scores are:                                      opt bits E(32554)
CCDS75802.1 OPLAH gene_id:26873|Hs108|chr8         (1288) 8671 1659.3       0


>>CCDS75802.1 OPLAH gene_id:26873|Hs108|chr8              (1288 aa)
 initn: 8671 init1: 8671 opt: 8671  Z-score: 8901.6  bits: 1659.3 E(32554):    0
Smith-Waterman score: 8671; 100.0% identity (100.0% similar) in 1288 aa overlap (1-1288:1-1288)

               10        20        30        40        50        60
pF1KB7 MGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MGSPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQEAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MLLPRDQPLDSSHIASIRMGTTVATNALLERKGERVALLVTRGFRDLLHIGTQARGDLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MLLPRDQPLDSSHIASIRMGTTVATNALLERKGERVALLVTRGFRDLLHIGTQARGDLFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LAVPMPEVLYEEVLEVDERVVLHRGEAGTGTPVKGRTGDLLEVQQPVDLGALRGKLEGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LAVPMPEVLYEEVLEVDERVVLHRGEAGTGTPVKGRTGDLLEVQQPVDLGALRGKLEGLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SRGIRSLAVVLMHSYTWAQHEQQVGVLARELGFTHVSLSSEAMPMVRIVPRGHTACADAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SRGIRSLAVVLMHSYTWAQHEQQVGVLARELGFTHVSLSSEAMPMVRIVPRGHTACADAY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LTPAIQRYVQGFCRGFQGQLKDVQVLFMRSDGGLAPMDTFSGSSAVLSGPAGGVVGYSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTPAIQRYVQGFCRGFQGQLKDVQVLFMRSDGGLAPMDTFSGSSAVLSGPAGGVVGYSAT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 TYQQEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TYQQEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDINTVAAGGGSRL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 FFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGENQPLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGENQPLSP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EASRKALEAVATEVNSFLTNGPCPASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EASRKALEAVATEVNSFLTNGPCPASPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 SAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLLYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLLYA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 PETFVQLDQRLSRLEEQCVDALQAQGFPRSQISTESFLHLRYQGTDCALMVSAHQHPATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PETFVQLDQRLSRLEEQCVDALQAQGFPRSQISTESFLHLRYQGTDCALMVSAHQHPATA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 RSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDAPKAQTGPPRVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDAPKAQTGPPRVD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB7 KMTQCYFEGGYQETPVYLLAELGYGHKLHGPCLIIDSNSTILVEPGCQAEVTKTGDICIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KMTQCYFEGGYQETPVYLLAELGYGHKLHGPCLIIDSNSTILVEPGCQAEVTKTGDICIS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB7 VGAEVPGTVGPQLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VGAEVPGTVGPQLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB7 GLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFW
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB7 PGQTRPVFYVASRGHHADIGGITPGSMPPHSTMLQQEGAVFLSFKLVQGGVFQEEAVTEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGQTRPVFYVASRGHHADIGGITPGSMPPHSTMLQQEGAVFLSFKLVQGGVFQEEAVTEA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB7 LRAPGKVPNCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGHIQANA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LRAPGKVPNCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGHIQANA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB7 ELAVRDMLRAFGTSRQARGLPLEVSSEDHMDDGSPIRLRVQISLSQGSAVFDFSGTGPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ELAVRDMLRAFGTSRQARGLPLEVSSEDHMDDGSPIRLRVQISLSQGSAVFDFSGTGPEV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB7 FGNLNAPRAVTLSALIYCLRCLVGRDIPLNQGCLAPVRVVIPRGSILDPSPEAAVVGGNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FGNLNAPRAVTLSALIYCLRCLVGRDIPLNQGCLAPVRVVIPRGSILDPSPEAAVVGGNV
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB7 LTSQRVVDVILGAFGACAASQGCMNNVTLGNAHMGYYETVAGGAGAGPSWHGRSGVHSHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTSQRVVDVILGAFGACAASQGCMNNVTLGNAHMGYYETVAGGAGAGPSWHGRSGVHSHM
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KB7 TNTRITDPEILESRYPVILRRFELRRGSGGRGRFRGGDGVTRELLFREEALLSVLTERRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TNTRITDPEILESRYPVILRRFELRRGSGGRGRFRGGDGVTRELLFREEALLSVLTERRA
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KB7 FRPYGLHGGEPGARGLNLLIRKNGRTVNLGGKTSVTVYPGDVFCLHTPGGGGYGDPEDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FRPYGLHGGEPGARGLNLLIRKNGRTVNLGGKTSVTVYPGDVFCLHTPGGGGYGDPEDPA
             1210      1220      1230      1240      1250      1260

             1270      1280        
pF1KB7 PPPGSPPQALAFPEHGSVYEYRRAQEAV
       ::::::::::::::::::::::::::::
CCDS75 PPPGSPPQALAFPEHGSVYEYRRAQEAV
             1270      1280        




1288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:47:44 2016 done: Fri Nov  4 06:47:45 2016
 Total Scan time:  5.850 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]