FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7276, 382 aa
  1>>>pF1KB7276 382 - 382 aa - 382 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7581+/-0.000454; mu= 14.7091+/- 0.028
 mean_var=76.9566+/-15.284, 0's: 0 Z-trim(109.8): 67  B-trim: 121 in 1/54
 Lambda= 0.146201
 statistics sampled from 17963 (17991) to 17963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.554), E-opt: 0.2 (0.211), width:  16
 Scan time:  6.750

The best scores are:                                      opt bits E(85289)
NP_001686 (OMIM: 603097) V-type proton ATPase subu ( 382) 2470 530.9 1.9e-150


>>NP_001686 (OMIM: 603097) V-type proton ATPase subunit   (382 aa)
 initn: 2470 init1: 2470 opt: 2470  Z-score: 2822.0  bits: 530.9 E(85289): 1.9e-150
Smith-Waterman score: 2470; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KB7 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 RVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLN
              310       320       330       340       350       360

              370       380  
pF1KB7 LSQQEYYPYVYYKIDCNLLEFK
       ::::::::::::::::::::::
NP_001 LSQQEYYPYVYYKIDCNLLEFK
              370       380  




382 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:33:24 2016 done: Sat Nov  5 21:33:25 2016
 Total Scan time:  6.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]