FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7276, 382 aa
  1>>>pF1KB7276 382 - 382 aa - 382 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0365+/-0.00111; mu= 13.2422+/- 0.066
 mean_var=73.3498+/-14.578, 0's: 0 Z-trim(102.4): 29  B-trim: 0 in 0/49
 Lambda= 0.149753
 statistics sampled from 6907 (6919) to 6907 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.213), width:  16
 Scan time:  2.630

The best scores are:                                      opt bits E(32554)
CCDS6296.1 ATP6V1C1 gene_id:528|Hs108|chr8         ( 382) 2470 543.2 1.4e-154
CCDS1674.1 ATP6V1C2 gene_id:245973|Hs108|chr2      ( 381) 1625 360.7 1.3e-99
CCDS42653.1 ATP6V1C2 gene_id:245973|Hs108|chr2     ( 427) 1118 251.2 1.3e-66


>>CCDS6296.1 ATP6V1C1 gene_id:528|Hs108|chr8              (382 aa)
 initn: 2470 init1: 2470 opt: 2470  Z-score: 2888.7  bits: 543.2 E(32554): 1.4e-154
Smith-Waterman score: 2470; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)

               10        20        30        40        50        60
pF1KB7 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 RVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLN
              310       320       330       340       350       360

              370       380  
pF1KB7 LSQQEYYPYVYYKIDCNLLEFK
       ::::::::::::::::::::::
CCDS62 LSQQEYYPYVYYKIDCNLLEFK
              370       380  

>>CCDS1674.1 ATP6V1C2 gene_id:245973|Hs108|chr2           (381 aa)
 initn: 1510 init1: 1341 opt: 1625  Z-score: 1902.1  bits: 360.7 E(32554): 1.3e-99
Smith-Waterman score: 1625; 62.3% identity (90.3% similar) in 382 aa overlap (1-380:1-381)

               10        20        30        40        50        60
pF1KB7 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK
       :.:::::::::.:   :. :.....:::.: :. ..:: :::.:::::: ::::::::.:
CCDS16 MSEFWLISAPGDKENLQALERMNTVTSKSN-LSYNTKFAIPDFKVGTLDSLVGLSDELGK
               10        20        30         40        50         

               70        80        90       100       110       120
pF1KB7 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN
       ::.:.:......:: ...:.:::: ::::.::::::::....:.:.:::::::.:: : .
CCDS16 LDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLANGVDLTSFVTHFEWDMAKYPVKQPLVS
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB7 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE
       . . ::: ..::. :::::..:::.:: ::.:::.:. :.:.::.:..::.:.:::::::
CCDS16 VVDTIAKQLAQIEMDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKEDFVLDSE
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB7 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK
       :::::::.::: :...: : ::.:..::::::.....::... : .::::::...::. :
CCDS16 YLVTLLVIVPKPNYSQWQKTYESLSDMVVPRSTKLITEDKEGGLFTVTLFRKVIEDFKTK
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB7 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKAL
       :.:::: ::.: :.:.:.. ..::: :: .:::.:.:::.::::::::::::::::.:::
CCDS16 AKENKFTVREFYYDEKEIEREREEMARLLSDKKQQYGPLLRWLKVNFSEAFIAWIHIKAL
     240       250       260       270       280       290         

              310       320        330       340        350        
pF1KB7 RVFVESVLRYGLPVNFQAMLLQPNKKT-LKKLREVLHELYKHLDSSAA-AIIDAPMDIPG
       ::::::::::::::::::.::::.::.  :.:::::. ...:::  :: .:.:: ..:::
CCDS16 RVFVESVLRYGLPVNFQAVLLQPHKKSSTKRLREVLNSVFRHLDEVAATSILDASVEIPG
     300       310       320       330       340       350         

      360       370       380  
pF1KB7 LNLSQQEYYPYVYYKIDCNLLEFK
       :.:..:.:.::::..:: .::.  
CCDS16 LQLNNQDYFPYVYFHIDLSLLD  
     360       370       380   

>>CCDS42653.1 ATP6V1C2 gene_id:245973|Hs108|chr2          (427 aa)
 initn: 1496 init1: 1019 opt: 1118  Z-score: 1309.3  bits: 251.2 E(32554): 1.3e-66
Smith-Waterman score: 1460; 55.6% identity (80.2% similar) in 414 aa overlap (1-366:1-413)

               10        20        30        40        50        60
pF1KB7 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAK
       :.:::::::::.:   :. :.....:::.: :. ..:: :::.:::::: ::::::::.:
CCDS42 MSEFWLISAPGDKENLQALERMNTVTSKSN-LSYNTKFAIPDFKVGTLDSLVGLSDELGK
               10        20        30         40        50         

               70        80        90       100       110       120
pF1KB7 LDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKN
       ::.:.:......:: ...:.:::: ::::.::::::::....:.:.:::::::.:: : .
CCDS42 LDTFAESLIRRMAQSVVEVMEDSKGKVQEHLLANGVDLTSFVTHFEWDMAKYPVKQPLVS
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB7 ISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSE
       . . ::: ..::. :::::..:::.:: ::.:::.:. :.:.::.:..::.:.:::::::
CCDS42 VVDTIAKQLAQIEMDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKEDFVLDSE
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB7 YLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK
       :::::::.::: :...: : ::.:..::::::.....::... : .::::::...::. :
CCDS42 YLVTLLVIVPKPNYSQWQKTYESLSDMVVPRSTKLITEDKEGGLFTVTLFRKVIEDFKTK
     180       190       200       210       220       230         

              250       260       270                              
pF1KB7 ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQF------------------------
       :.:::: ::.: :.:.:.. ..::: :: .:::.:.                        
CCDS42 AKENKFTVREFYYDEKEIEREREEMARLLSDKKQQYQTSCVALKKGSSTFPDHKVKVTPL
     240       250       260       270       280       290         

                              280       290       300       310    
pF1KB7 ----------------------GPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPV
                             :::.::::::::::::::::.:::::::::::::::::
CCDS42 GNPDRPAAGQTDRERESEGEGEGPLLRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPV
     300       310       320       330       340       350         

          320        330       340        350       360       370  
pF1KB7 NFQAMLLQPNKKT-LKKLREVLHELYKHLDSSAA-AIIDAPMDIPGLNLSQQEYYPYVYY
       ::::.::::.::.  :.:::::. ...:::  :: .:.:: ..::::.:..:.:      
CCDS42 NFQAVLLQPHKKSSTKRLREVLNSVFRHLDEVAATSILDASVEIPGLQLNNQDYFPYVYF
     360       370       380       390       400       410         

            380  
pF1KB7 KIDCNLLEFK
                 
CCDS42 HIDLSLLD  
     420         




382 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:33:23 2016 done: Sat Nov  5 21:33:24 2016
 Total Scan time:  2.630 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]