FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7241, 147 aa
  1>>>pF1KB7241 147 - 147 aa - 147 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8734+/-0.000248; mu= 14.6602+/- 0.016
 mean_var=65.5899+/-13.059, 0's: 0 Z-trim(121.4): 11  B-trim: 122 in 1/49
 Lambda= 0.158364
 statistics sampled from 37881 (37894) to 37881 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.444), width:  16
 Scan time:  5.600

The best scores are:                                      opt bits E(85289)
NP_079538 (OMIM: 610434) lymphocyte antigen 6 comp ( 150) 1049 247.2 7.4e-66
NP_067044 (OMIM: 610433) lymphocyte antigen 6 comp ( 201)  166 45.5   5e-05


>>NP_079538 (OMIM: 610434) lymphocyte antigen 6 complex   (150 aa)
 initn: 1049 init1: 1049 opt: 1049  Z-score: 1303.3  bits: 247.2 E(85289): 7.4e-66
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:4-150)

                  10        20        30        40        50       
pF1KB7    MAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYL
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MRFMAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYL
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB7 RCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 RCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTR
               70        80        90       100       110       120

       120       130       140       
pF1KB7 TSPVSGFWIFSQYCFLDFCNDPQNRGLYTP
       ::::::::::::::::::::::::::::::
NP_079 TSPVSGFWIFSQYCFLDFCNDPQNRGLYTP
              130       140       150

>>NP_067044 (OMIM: 610433) lymphocyte antigen 6 complex   (201 aa)
 initn: 124 init1:  85 opt: 166  Z-score: 211.3  bits: 45.5 E(85289): 5e-05
Smith-Waterman score: 173; 28.6% identity (52.9% similar) in 119 aa overlap (25-140:5-111)

               10        20        30        40        50        60
pF1KB7 MAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYLRCY
                               .:. ::::.... :: :::          :    :.
NP_067                     MKVHMLVGVLVMVGFTVGK-VPV----------PDIRTCH
                                   10         20                   

               70        80        90       100       110       120
pF1KB7 RCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTRTSP
        ::.:   .::. ::. :   ..: :...    .     .:  : ..     :.. :.. 
NP_067 FCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC-GQYISYRCQEKRNTY
      30        40        50        60        70         80        

              130          140                                     
pF1KB7 VSGFWIFSQYCFLDFCND---PQNRGLYTP                              
        . .:  .: :  :.::.   ::                                     
NP_067 FAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPHDRPLALPLSDSQIQWFYQALNLSLPLPN
       90       100       110       120       130       140        




147 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:14:35 2016 done: Fri Nov  4 06:14:36 2016
 Total Scan time:  5.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]