FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7241, 147 aa
  1>>>pF1KB7241 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8053+/-0.000523; mu= 14.9836+/- 0.032
 mean_var=63.7095+/-12.535, 0's: 0 Z-trim(114.4): 13  B-trim: 611 in 1/50
 Lambda= 0.160684
 statistics sampled from 14995 (15003) to 14995 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.461), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS34401.2 LY6G5C gene_id:80741|Hs108|chr6        ( 150) 1049 250.5 2.8e-67


>>CCDS34401.2 LY6G5C gene_id:80741|Hs108|chr6             (150 aa)
 initn: 1049 init1: 1049 opt: 1049  Z-score: 1321.3  bits: 250.5 E(32554): 2.8e-67
Smith-Waterman score: 1049; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:4-150)

                  10        20        30        40        50       
pF1KB7    MAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYL
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRFMAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYL
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB7 RCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTR
               70        80        90       100       110       120

       120       130       140       
pF1KB7 TSPVSGFWIFSQYCFLDFCNDPQNRGLYTP
       ::::::::::::::::::::::::::::::
CCDS34 TSPVSGFWIFSQYCFLDFCNDPQNRGLYTP
              130       140       150




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:14:35 2016 done: Fri Nov  4 06:14:35 2016
 Total Scan time:  1.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]