Result of FASTA (omim) for
pF1KB7234
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7234, 388 aa
1>>>pF1KB7234 388 - 388 aa - 388 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7524+/-0.000537; mu= -1.5621+/- 0.032
mean_var=279.5519+/-58.310, 0's: 0 Z-trim(113.5): 317 B-trim: 539 in 1/55
Lambda= 0.076708
statistics sampled from 22449 (22875) to 22449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.268), width: 16
Scan time: 7.750
The best scores are: opt bits E(85289)
NP_660339 (OMIM: 609744) cell adhesion molecule 4 ( 388) 2575 299.3 1e-80
XP_016881941 (OMIM: 609744) PREDICTED: cell adhesi ( 369) 2421 282.2 1.3e-75
XP_005258677 (OMIM: 609744) PREDICTED: cell adhesi ( 345) 2054 241.6 2.2e-63
NP_001091987 (OMIM: 605686) cell adhesion molecule ( 414) 1003 125.4 2.5e-28
NP_001161147 (OMIM: 609938) cell adhesion molecule ( 404) 876 111.3 4.2e-24
XP_006713145 (OMIM: 609938) PREDICTED: cell adhesi ( 395) 868 110.4 7.6e-24
XP_016861552 (OMIM: 609938) PREDICTED: cell adhesi ( 397) 868 110.4 7.7e-24
NP_055148 (OMIM: 605686) cell adhesion molecule 1 ( 442) 844 107.8 5.2e-23
NP_001287973 (OMIM: 605686) cell adhesion molecule ( 453) 844 107.8 5.3e-23
NP_001287972 (OMIM: 605686) cell adhesion molecule ( 471) 844 107.8 5.4e-23
XP_005271551 (OMIM: 605686) PREDICTED: cell adhesi ( 425) 841 107.4 6.4e-23
NP_001287974 (OMIM: 605686) cell adhesion molecule ( 443) 836 106.9 9.6e-23
XP_016872947 (OMIM: 605686) PREDICTED: cell adhesi ( 402) 822 105.3 2.6e-22
XP_016872946 (OMIM: 605686) PREDICTED: cell adhesi ( 477) 823 105.5 2.7e-22
NP_001120645 (OMIM: 609743) cell adhesion molecule ( 398) 804 103.3 1e-21
NP_067012 (OMIM: 609743) cell adhesion molecule 3 ( 432) 790 101.8 3.2e-21
XP_006713144 (OMIM: 609938) PREDICTED: cell adhesi ( 435) 717 93.7 8.7e-19
NP_001161146 (OMIM: 609938) cell adhesion molecule ( 435) 717 93.7 8.7e-19
NP_694854 (OMIM: 609938) cell adhesion molecule 2 ( 437) 717 93.7 8.8e-19
XP_016861551 (OMIM: 609938) PREDICTED: cell adhesi ( 449) 717 93.7 8.9e-19
XP_016872950 (OMIM: 605686) PREDICTED: cell adhesi ( 267) 650 86.1 1.1e-16
NP_001243433 (OMIM: 609938) cell adhesion molecule ( 287) 624 83.2 8.3e-16
NP_001243434 (OMIM: 609938) cell adhesion molecule ( 287) 624 83.2 8.3e-16
XP_016872949 (OMIM: 605686) PREDICTED: cell adhesi ( 295) 491 68.5 2.3e-11
XP_016872948 (OMIM: 605686) PREDICTED: cell adhesi ( 324) 491 68.6 2.4e-11
NP_115499 (OMIM: 607762) kin of IRRE-like protein ( 633) 377 56.3 2.4e-07
XP_016882837 (OMIM: 607762) PREDICTED: kin of IRRE ( 673) 377 56.3 2.5e-07
XP_011525665 (OMIM: 607762) PREDICTED: kin of IRRE ( 708) 377 56.3 2.6e-07
XP_011525664 (OMIM: 607762) PREDICTED: kin of IRRE ( 708) 377 56.3 2.6e-07
NP_954649 (OMIM: 607762) kin of IRRE-like protein ( 708) 377 56.3 2.6e-07
NP_060710 (OMIM: 607428) kin of IRRE-like protein ( 757) 368 55.4 5.4e-07
XP_005245362 (OMIM: 607428) PREDICTED: kin of IRRE ( 773) 368 55.4 5.4e-07
NP_001333439 (OMIM: 609743) cell adhesion molecule ( 352) 338 51.7 3.2e-06
NP_001155179 (OMIM: 607761,612581) kin of IRRE-lik ( 600) 342 52.4 3.4e-06
NP_954648 (OMIM: 607762) kin of IRRE-like protein ( 583) 341 52.3 3.6e-06
NP_001316459 (OMIM: 607762) kin of IRRE-like prote ( 658) 341 52.3 3.9e-06
XP_011525667 (OMIM: 607762) PREDICTED: kin of IRRE ( 658) 341 52.3 3.9e-06
XP_011541335 (OMIM: 607761,612581) PREDICTED: kin ( 766) 342 52.5 4e-06
NP_001288026 (OMIM: 607761,612581) kin of IRRE-lik ( 766) 342 52.5 4e-06
XP_011541334 (OMIM: 607761,612581) PREDICTED: kin ( 772) 342 52.5 4e-06
NP_115920 (OMIM: 607761,612581) kin of IRRE-like p ( 778) 342 52.5 4e-06
XP_016873909 (OMIM: 607761,612581) PREDICTED: kin ( 778) 342 52.5 4e-06
XP_011541333 (OMIM: 607761,612581) PREDICTED: kin ( 778) 342 52.5 4e-06
XP_011541332 (OMIM: 607761,612581) PREDICTED: kin ( 784) 342 52.5 4e-06
XP_016873908 (OMIM: 607761,612581) PREDICTED: kin ( 791) 342 52.5 4.1e-06
XP_011541329 (OMIM: 607761,612581) PREDICTED: kin ( 803) 342 52.5 4.1e-06
XP_016873907 (OMIM: 607761,612581) PREDICTED: kin ( 803) 342 52.5 4.1e-06
XP_011541330 (OMIM: 607761,612581) PREDICTED: kin ( 803) 342 52.5 4.1e-06
XP_011541328 (OMIM: 607761,612581) PREDICTED: kin ( 809) 342 52.5 4.1e-06
NP_002846 (OMIM: 225060,600644) nectin-1 isoform 1 ( 517) 300 47.7 7.7e-05
>>NP_660339 (OMIM: 609744) cell adhesion molecule 4 prec (388 aa)
initn: 2575 init1: 2575 opt: 2575 Z-score: 1570.1 bits: 299.3 E(85289): 1e-80
Smith-Waterman score: 2575; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:1-388)
10 20 30 40 50 60
pF1KB7 MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 RQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 LVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 ASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 LVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 RALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 RALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEA
310 320 330 340 350 360
370 380
pF1KB7 SGLDEQGEAREAFLNGSDGHKRKEEFFI
::::::::::::::::::::::::::::
NP_660 SGLDEQGEAREAFLNGSDGHKRKEEFFI
370 380
>>XP_016881941 (OMIM: 609744) PREDICTED: cell adhesion m (369 aa)
initn: 2421 init1: 2421 opt: 2421 Z-score: 1478.2 bits: 282.2 E(85289): 1.3e-75
Smith-Waterman score: 2421; 100.0% identity (100.0% similar) in 367 aa overlap (22-388:3-369)
10 20 30 40 50 60
pF1KB7 MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPA
:::::::::::::::::::::::::::::::::::::::
XP_016 MTGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPA
10 20 30 40
70 80 90 100 110 120
pF1KB7 RQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 LVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 ASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 LVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHA
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB7 RALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEA
290 300 310 320 330 340
370 380
pF1KB7 SGLDEQGEAREAFLNGSDGHKRKEEFFI
::::::::::::::::::::::::::::
XP_016 SGLDEQGEAREAFLNGSDGHKRKEEFFI
350 360
>>XP_005258677 (OMIM: 609744) PREDICTED: cell adhesion m (345 aa)
initn: 2279 init1: 2054 opt: 2054 Z-score: 1259.1 bits: 241.6 E(85289): 2.2e-63
Smith-Waterman score: 2197; 88.9% identity (88.9% similar) in 388 aa overlap (1-388:1-345)
10 20 30 40 50 60
pF1KB7 MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 RALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEA
::::::::: ::::::::
XP_005 RALYVLVVY-------------------------------------------GSYLTHEA
310
370 380
pF1KB7 SGLDEQGEAREAFLNGSDGHKRKEEFFI
::::::::::::::::::::::::::::
XP_005 SGLDEQGEAREAFLNGSDGHKRKEEFFI
320 330 340
>>NP_001091987 (OMIM: 605686) cell adhesion molecule 1 i (414 aa)
initn: 984 init1: 362 opt: 1003 Z-score: 629.5 bits: 125.4 E(85289): 2.5e-28
Smith-Waterman score: 1003; 40.8% identity (73.5% similar) in 392 aa overlap (6-388:25-414)
10 20 30 40
pF1KB7 MGRARRFQWPLLLLWAAAAGP-GAGQEVQTENVTVAEGGVA
:.. :::. ::: : : ::.. :..::: :: ::
NP_001 MASVVLPSGSQCAAAAAAAAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 EITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEG
:.:.... : :.. . :: :::..: : ::: :::: .:: .... :... . :::
NP_001 TISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEG
70 80 90 100 110 120
110 120 130 140 150
pF1KB7 GYFCQLYTEDTHHQIATLTVLVAPENPVVEV-REQAVEGGEVELSCLVPRSRPAATLRWY
:::::::. ... .:.:::: :.: .... .. :::: :.:..: . :.::.:.::.
NP_001 RYFCQLYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 RDRKELKGVSSSQENGKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLD
. :::: : .: . ...:.: . ..: ..::: .::.... :. .:. ::: :.
NP_001 KGNTELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAV-TGNL-QTQRYLE
190 200 210 220 230
220 230 240 250 260 270
pF1KB7 VQYSPTARIHAS---QAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETL
:::.: ..:. . :...::::.: ::: . :.:.: .. : : .. .:..: : .:
NP_001 VQYKPQVHIQMTYPLQGLTREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNL
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB7 TLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQT-SVPYAIVGGILALLVF
. .: ..::::: ::::: :.:.. :.: ::: : :.. .: .:..::..:..::
NP_001 FINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDSRAGEEGSIRAVDHAVIGGVVAVVVF
300 310 320 330 340 350
340 350 360 370 380
pF1KB7 LIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLN---GSDGHKRKEEFFI
..:.:. . .:.::.:.::::.: :. ..: :..: :... ..:.:.::
NP_001 AMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
360 370 380 390 400 410
>>NP_001161147 (OMIM: 609938) cell adhesion molecule 2 i (404 aa)
initn: 668 init1: 291 opt: 876 Z-score: 553.7 bits: 111.3 E(85289): 4.2e-24
Smith-Waterman score: 876; 39.5% identity (70.8% similar) in 390 aa overlap (12-388:17-404)
10 20 30 40 50
pF1KB7 MGRARRFQWPLLLLWAAAAG---PGA-GQEVQTENVTVAEGGVAEITCRLHQYDG
::: :::. :. :: :.::::.:::.: .:::. : :.
NP_001 MIWKRSAVLRFYSVCGLLLQAAASKNKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 SIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDT
. . .:::.:::.:. .::.:.:..: . : ... : .::. : ::: : :.:.: .
NP_001 TSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 HHQIATLTVLVAPENPVVE-VREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSS
. . : :::: .::.: . ..:: ..:.: . :.::: .::... ::.: :.
NP_001 KTSKAYLTVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAADIRWFKNDKEIKDVKY
130 140 150 160 170 180
180 190 200 210 220
pF1KB7 SQE---NGKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTAR
.: : :...:.::. :::::.::: .::......: . . : ::...:.:...
NP_001 LKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVDHESLNATPQVAMQ-VLEIHYTPSVK
190 200 210 220 230
230 240 250 260 270 280
pF1KB7 IHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPE--RAEAVGETLTLPGLVSAD
: : .::. :.::: :.: :. . :.. . ::. : . :. :.. : ..:
NP_001 IIPSTPFPQEGQPLILTCESKGKPLPEPVLWTKDGGELPDPDRMVVSGRELNILFLNKTD
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 NGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMV
:::: :::.: :.. : :::.:.::.:.. .:.. .:..:::.:..::. .: . .
NP_001 NGTYRCEATNTIGQSSAEYVLIVHDPNALA-GQNGPDHALIGGIVAVVVFVTLCSIFLLG
300 310 320 330 340 350
350 360 370 380
pF1KB7 WCSVRQKGSYLTHEASGLDEQGEAREAFLN--GSD-GHKRKEEFFI
.:.::.:::.::.: .. .: :..: ::. . ..:.:.::
NP_001 RYLARHKGTYLTNEAKGAEDAPDADTAIINAEGSQVNAEEKKEYFI
360 370 380 390 400
>>XP_006713145 (OMIM: 609938) PREDICTED: cell adhesion m (395 aa)
initn: 668 init1: 291 opt: 868 Z-score: 549.0 bits: 110.4 E(85289): 7.6e-24
Smith-Waterman score: 868; 39.3% identity (71.4% similar) in 374 aa overlap (24-388:24-395)
10 20 30 40 50 60
pF1KB7 MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPA
:: :.::::.:::.: .:::. : :.. . .:::
XP_006 MIWKRSAVLRFYSVCGLLLQGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTV
.:::.:. .::.:.:..: . : ... : .::. : ::: : :.:.: .. . : :::
XP_006 QQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTV
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 LVAPENPVVE-VREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQE---NGK
: .::.: . ..:: ..:.: . :.::: .::... ::.: :. .: : :
XP_006 LGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 VWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVR
...:.::. :::::.::: .::......: . . : ::...:.:...: : .
XP_006 TFTVSSTLDFRVDRSDDGVAVICRVDHESLNATPQVAMQ-VLEIHYTPSVKIIPSTPFPQ
190 200 210 220 230
240 250 260 270 280 290
pF1KB7 EGDTLVLTCAVTGNPRPNQIRWNRGNESLPE--RAEAVGETLTLPGLVSADNGTYTCEAS
::. :.::: :.: :. . :.. . ::. : . :. :.. : ..::::: :::.
XP_006 EGQPLILTCESKGKPLPEPVLWTKDGGELPDPDRMVVSGRELNILFLNKTDNGTYRCEAT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 NKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGS
: :.. : :::.:.::.:.. .:.. .:..:::.:..::. .: . . .:.::.
XP_006 NTIGQSSAEYVLIVHDPNALA-GQNGPDHALIGGIVAVVVFVTLCSIFLLGRYLARHKGT
300 310 320 330 340 350
360 370 380
pF1KB7 YLTHEASGLDEQGEAREAFLN--GSD-GHKRKEEFFI
:::.::.: .. .: :..: ::. . ..:.:.::
XP_006 YLTNEAKGAEDAPDADTAIINAEGSQVNAEEKKEYFI
360 370 380 390
>>XP_016861552 (OMIM: 609938) PREDICTED: cell adhesion m (397 aa)
initn: 668 init1: 291 opt: 868 Z-score: 549.0 bits: 110.4 E(85289): 7.7e-24
Smith-Waterman score: 868; 39.3% identity (71.4% similar) in 374 aa overlap (24-388:26-397)
10 20 30 40 50
pF1KB7 MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQN
:: :.::::.:::.: .:::. : :.. . .:
XP_016 MFVLFLCNLSLVPAAASKNKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATL
::.:::.:. .::.:.:..: . : ... : .::. : ::: : :.:.: .. . : :
XP_016 PAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 TVLVAPENPVVE-VREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQE---N
::: .::.: . ..:: ..:.: . :.::: .::... ::.: :. .: :
XP_016 TVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDAN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 GKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAV
:...:.::. :::::.::: .::......: . . : ::...:.:...: :
XP_016 RKTFTVSSTLDFRVDRSDDGVAVICRVDHESLNATPQVAMQ-VLEIHYTPSVKIIPSTPF
190 200 210 220 230
240 250 260 270 280 290
pF1KB7 VREGDTLVLTCAVTGNPRPNQIRWNRGNESLPE--RAEAVGETLTLPGLVSADNGTYTCE
.::. :.::: :.: :. . :.. . ::. : . :. :.. : ..::::: ::
XP_016 PQEGQPLILTCESKGKPLPEPVLWTKDGGELPDPDRMVVSGRELNILFLNKTDNGTYRCE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 ASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQK
:.: :.. : :::.:.::.:.. .:.. .:..:::.:..::. .: . . .:.:
XP_016 ATNTIGQSSAEYVLIVHDPNALA-GQNGPDHALIGGIVAVVVFVTLCSIFLLGRYLARHK
300 310 320 330 340 350
360 370 380
pF1KB7 GSYLTHEASGLDEQGEAREAFLN--GSD-GHKRKEEFFI
:.:::.::.: .. .: :..: ::. . ..:.:.::
XP_016 GTYLTNEAKGAEDAPDADTAIINAEGSQVNAEEKKEYFI
360 370 380 390
>>NP_055148 (OMIM: 605686) cell adhesion molecule 1 isof (442 aa)
initn: 839 init1: 362 opt: 844 Z-score: 534.1 bits: 107.8 E(85289): 5.2e-23
Smith-Waterman score: 957; 38.2% identity (68.6% similar) in 414 aa overlap (6-385:25-436)
10 20 30 40
pF1KB7 MGRARRFQWPLLLLWAAAAGP-GAGQEVQTENVTVAEGGVA
:.. :::. ::: : : ::.. :..::: :: ::
NP_055 MASVVLPSGSQCAAAAAAAAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 EITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEG
:.:.... : :.. . :: :::..: : ::: :::: .:: .... :... . :::
NP_055 TISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEG
70 80 90 100 110 120
110 120 130 140 150
pF1KB7 GYFCQLYTEDTHHQIATLTVLVAPENPVVEV-REQAVEGGEVELSCLVPRSRPAATLRWY
:::::::. ... .:.:::: :.: .... .. :::: :.:..: . :.::.:.::.
NP_055 RYFCQLYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 RDRKELKGVSSSQENGKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLD
. :::: : .: . ...:.: . ..: ..::: .::.... :. .:. ::: :.
NP_055 KGNTELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAV-TGNL-QTQRYLE
190 200 210 220 230
220 230 240 250 260 270
pF1KB7 VQYSPTARIHAS---QAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETL
:::.: ..:. . :...::::.: ::: . :.:.: .. : : .. .:..: : .:
NP_055 VQYKPQVHIQMTYPLQGLTREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNL
240 250 260 270 280 290
280 290 300 310 320
pF1KB7 TLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTS----------------
. .: ..::::: ::::: :.:.. :.: :::: ... :.
NP_055 FINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTILTII
300 310 320 330 340 350
330 340 350 360
pF1KB7 -------------VPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQG
: .:..::..:..:: ..:.:. . .:.::.:.::::.: :. .
NP_055 TDSRAGEEGSIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAA
360 370 380 390 400 410
370 380
pF1KB7 EAREAFLNGSDGHKRKEEFFI
.: :..:. :.. .::
NP_055 DADTAIINAEGGQNNSEEKKEYFI
420 430 440
>>NP_001287973 (OMIM: 605686) cell adhesion molecule 1 i (453 aa)
initn: 999 init1: 362 opt: 844 Z-score: 534.0 bits: 107.8 E(85289): 5.3e-23
Smith-Waterman score: 917; 37.3% identity (66.7% similar) in 415 aa overlap (6-375:25-437)
10 20 30 40
pF1KB7 MGRARRFQWPLLLLWAAAAGP-GAGQEVQTENVTVAEGGVA
:.. :::. ::: : : ::.. :..::: :: ::
NP_001 MASVVLPSGSQCAAAAAAAAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 EITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEG
:.:.... : :.. . :: :::..: : ::: :::: .:: .... :... . :::
NP_001 TISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEG
70 80 90 100 110 120
110 120 130 140 150
pF1KB7 GYFCQLYTEDTHHQIATLTVLVAPENPVVEV-REQAVEGGEVELSCLVPRSRPAATLRWY
:::::::. ... .:.:::: :.: .... .. :::: :.:..: . :.::.:.::.
NP_001 RYFCQLYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 RDRKELKGVSSSQENGKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLD
. :::: : .: . ...:.: . ..: ..::: .::.... :. .:. ::: :.
NP_001 KGNTELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAV-TGNL-QTQRYLE
190 200 210 220 230
220 230 240 250 260 270
pF1KB7 VQYSPTARIHAS---QAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETL
:::.: ..:. . :...::::.: ::: . :.:.: .. : : .. .:..: : .:
NP_001 VQYKPQVHIQMTYPLQGLTREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNL
240 250 260 270 280 290
280 290 300 310 320
pF1KB7 TLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTS----------------
. .: ..::::: ::::: :.:.. :.: :::: ... :.
NP_001 FINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTILTII
300 310 320 330 340 350
330 340 350
pF1KB7 ------------------------VPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYL
: .:..::..:..:: ..:.:. . .:.::.:.
NP_001 TDTTATTEPAVHDSRAGEEGSIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYF
360 370 380 390 400 410
360 370 380
pF1KB7 THEASGLDEQGEAREAFLNGSDGHKRKEEFFI
::::.: :. ..: :..:
NP_001 THEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
420 430 440 450
>>NP_001287972 (OMIM: 605686) cell adhesion molecule 1 i (471 aa)
initn: 999 init1: 362 opt: 844 Z-score: 533.8 bits: 107.8 E(85289): 5.4e-23
Smith-Waterman score: 848; 35.9% identity (63.6% similar) in 418 aa overlap (6-360:25-440)
10 20 30 40
pF1KB7 MGRARRFQWPLLLLWAAAAGP-GAGQEVQTENVTVAEGGVA
:.. :::. ::: : : ::.. :..::: :: ::
NP_001 MASVVLPSGSQCAAAAAAAAPPGLRLRLLLLLFSAAALIPTGDGQNLFTKDVTVIEGEVA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 EITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEG
:.:.... : :.. . :: :::..: : ::: :::: .:: .... :... . :::
NP_001 TISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEG
70 80 90 100 110 120
110 120 130 140 150
pF1KB7 GYFCQLYTEDTHHQIATLTVLVAPENPVVEV-REQAVEGGEVELSCLVPRSRPAATLRWY
:::::::. ... .:.:::: :.: .... .. :::: :.:..: . :.::.:.::.
NP_001 RYFCQLYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 RDRKELKGVSSSQENGKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLD
. :::: : .: . ...:.: . ..: ..::: .::.... :. .:. ::: :.
NP_001 KGNTELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAV-TGNL-QTQRYLE
190 200 210 220 230
220 230 240 250 260 270
pF1KB7 VQYSPTARIHAS---QAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETL
:::.: ..:. . :...::::.: ::: . :.:.: .. : : .. .:..: : .:
NP_001 VQYKPQVHIQMTYPLQGLTREGDALELTCEAIGKPQPVMVTWVRVDDEMPQHAVLSGPNL
240 250 260 270 280 290
280 290 300 310 320
pF1KB7 TLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTS----------------
. .: ..::::: ::::: :.:.. :.: :::: ... :.
NP_001 FINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTILTII
300 310 320 330 340 350
330
pF1KB7 ------------------------------------------VPYAIVGGILALLVFLII
: .:..::..:..:: ..
NP_001 TDTTATTEPAVHGLTQLPNSAEELDSEDLSDSRAGEEGSIRAVDHAVIGGVVAVVVFAML
360 370 380 390 400 410
340 350 360 370 380
pF1KB7 CVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI
:.:. . .:.::.:.::::
NP_001 CLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
420 430 440 450 460 470
388 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:45:27 2016 done: Sat Nov 5 09:45:28 2016
Total Scan time: 7.750 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]