FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7217, 326 aa
  1>>>pF1KB7217 326 - 326 aa - 326 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1502+/-0.000933; mu= 16.8575+/- 0.056
 mean_var=68.9549+/-13.962, 0's: 0 Z-trim(105.8): 27  B-trim: 0 in 0/50
 Lambda= 0.154451
 statistics sampled from 8596 (8610) to 8596 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS7347.1 SAMD8 gene_id:142891|Hs108|chr10        ( 326) 2261 512.9 1.4e-145
CCDS53543.1 SAMD8 gene_id:142891|Hs108|chr10       ( 415) 2180 494.9 4.7e-140
CCDS3677.1 SGMS2 gene_id:166929|Hs108|chr4         ( 365)  560 133.9 1.9e-31
CCDS7240.1 SGMS1 gene_id:259230|Hs108|chr10        ( 413)  559 133.7 2.5e-31


>>CCDS7347.1 SAMD8 gene_id:142891|Hs108|chr10             (326 aa)
 initn: 2261 init1: 2261 opt: 2261  Z-score: 2727.0  bits: 512.9 E(32554): 1.4e-145
Smith-Waterman score: 2261; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)

               10        20        30        40        50        60
pF1KB7 MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VLGDIKRLMLSVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VLGDIKRLMLSVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GPITDLNSDQYQYMNGKNKHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GPITDLNSDQYQYMNGKNKHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLCSLMGTVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLCSLMGTVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIWSGFGMTLTGVHTCGDYMFSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIWSGFGMTLTGVHTCGDYMFSG
              250       260       270       280       290       300

              310       320      
pF1KB7 HTVVLTMLNFFVTECKYLFSASMRIR
       ::::::::::::::::::::::::::
CCDS73 HTVVLTMLNFFVTECKYLFSASMRIR
              310       320      

>>CCDS53543.1 SAMD8 gene_id:142891|Hs108|chr10            (415 aa)
 initn: 2180 init1: 2180 opt: 2180  Z-score: 2628.0  bits: 494.9 E(32554): 4.7e-140
Smith-Waterman score: 2180; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KB7 MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VLGDIKRLMLSVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VLGDIKRLMLSVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GPITDLNSDQYQYMNGKNKHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GPITDLNSDQYQYMNGKNKHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLCSLMGTVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLCSLMGTVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIWSGFGMTLTGVHTCGDYMFSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIWSGFGMTLTGVHTCGDYMFSG
              250       260       270       280       290       300

              310       320                                        
pF1KB7 HTVVLTMLNFFVTECKYLFSASMRIR                                  
       ::::::::::::::                                              
CCDS53 HTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVFIAFYITTRLF
              310       320       330       340       350       360

>>CCDS3677.1 SGMS2 gene_id:166929|Hs108|chr4              (365 aa)
 initn: 551 init1: 460 opt: 560  Z-score: 677.9  bits: 133.9 E(32554): 1.9e-31
Smith-Waterman score: 560; 44.0% identity (76.2% similar) in 168 aa overlap (148-314:75-242)

       120       130       140       150       160       170       
pF1KB7 DCDGPITDLNSDQYQYMNGKNKHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERV
                                     :.::: .. ::. . . .:. ....:::::
CCDS36 LSSGLRKGTKKYPDYIQIAMPTESRNKFPLEWWKTGIAFIYAVFNLVLTTVMITVVHERV
           50        60        70        80        90       100    

       180       190       200       210       220       230       
pF1KB7 PDMQTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLCSLMG
       :  .  ::::: :.: . :. :::...:. :.::  .:.   :. ...::. ::.: ..:
CCDS36 PPKELSPPLPDKFFDYIDRVKWAFSVSEINGIILVGLWITQWLFLRYKSIVGRRFCFIIG
          110       120       130       140       150       160    

       240       250       260       270       280       290       
pF1KB7 TVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIWSGFGMTLTGVHT-CGDY
       :..: ::.::.::.: :::.:.::. :. :.   :..: . . :: :...:: :  :::.
CCDS36 TLYLYRCITMYVTTLPVPGMHFQCAPKLNGDSQAKVQRILRLISGGGLSITGSHILCGDF
          170       180       190       200       210       220    

        300       310       320                                    
pF1KB7 MFSGHTVVLTMLNFFVTECKYLFSASMRIR                              
       .::::::.::.  .:. :                                          
CCDS36 LFSGHTVTLTLTYLFIKEYSPRHFWWYHLICWLLSAAGIICILVAHEHYTIDVIIAYYIT
          230       240       250       260       270       280    

>>CCDS7240.1 SGMS1 gene_id:259230|Hs108|chr10             (413 aa)
 initn: 644 init1: 451 opt: 559  Z-score: 675.9  bits: 133.7 E(32554): 2.5e-31
Smith-Waterman score: 636; 35.9% identity (65.4% similar) in 312 aa overlap (12-314:7-298)

               10        20        30        40        50        60
pF1KB7 MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIK
                  :. :.:: :: .... :: . :  .: . :  :..::. :...:::  .
CCDS72      MKEVVYWSPKKVADWLLENAMPEYCEPL--EH-FTGQDLINLTQEDFKKPPL-CR
                    10        20          30         40         50 

                70         80        90       100           110    
pF1KB7 VLGDI-KRLMLSVRKLQ-KIHIDVLEEMGYNSDSPMGSMTPF----ISALQSTDWLCNGE
       : .:  .::.  .. :. . :... ..   :.   .:   :     .:   . . . :: 
CCDS72 VSSDNGQRLLDMIETLKMEHHLEAHKNGHANGHLNIGVDIPTPDGSFSIKIKPNGMPNGY
              60        70        80        90       100       110 

          120       130       140       150        160       170   
pF1KB7 LSHDCDGPITDLNSDQYQYMNGKNKHSVRRLDPEYW-KTILSCIYVFIVFGFTSFIMVIV
        ..    :. .:. .::               :  : ::.:. .:..  : .:. .. .:
CCDS72 RKEMIKIPMPELERSQY---------------PMEWGKTFLAFLYALSCFVLTTVMISVV
             120                      130       140       150      

           180       190       200       210       220       230   
pF1KB7 HERVPDMQTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLC
       :::::  .. ::::: :.:   :. :::.. :. ::::  .::.  :: :..::. ::. 
CCDS72 HERVPPKEVQPPLPDTFFDHFNRVQWAFSICEINGMILVGLWLIQWLLLKYKSIISRRFF
        160       170       180       190       200       210      

           240       250       260       270        280       290  
pF1KB7 SLMGTVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWE-KLHRAFAIWSGFGMTLTGVHT
        ..::..: ::.::.::.: :::.:..:. :..:. :: .:.: . . .: :...:: :.
CCDS72 CIVGTLYLYRCITMYVTTLPVPGMHFNCSPKLFGD-WEAQLRRIMKLIAGGGLSITGSHN
        220       230       240       250        260       270     

             300       310       320                               
pF1KB7 -CGDYMFSGHTVVLTMLNFFVTECKYLFSASMRIR                         
        ::::..:::::.::.  .:. :                                     
CCDS72 MCGDYLYSGHTVMLTLTYLFIKEYSPRRLWWYHWICWLLSVVGIFCILLAHDHYTVDVVV
         280       290       300       310       320       330     




326 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:09:51 2016 done: Sat Nov  5 21:09:51 2016
 Total Scan time:  2.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]