FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7208, 106 aa
  1>>>pF1KB7208 106 - 106 aa - 106 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8882+/-0.000582; mu= 11.1400+/- 0.035
 mean_var=50.9169+/-10.192, 0's: 0 Z-trim(111.0): 3  B-trim: 236 in 1/51
 Lambda= 0.179739
 statistics sampled from 12069 (12072) to 12069 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.371), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS14800.1 BPY2 gene_id:9083|Hs108|chrY           ( 106)  704 189.5 3.4e-49
CCDS44029.1 BPY2B gene_id:442867|Hs108|chrY        ( 106)  704 189.5 3.4e-49
CCDS44030.1 BPY2C gene_id:442868|Hs108|chrY        ( 106)  704 189.5 3.4e-49


>>CCDS14800.1 BPY2 gene_id:9083|Hs108|chrY                (106 aa)
 initn: 704 init1: 704 opt: 704  Z-score: 996.8  bits: 189.5 E(32554): 3.4e-49
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KB7 MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNT
               10        20        30        40        50        60

               70        80        90       100      
pF1KB7 LLQSKVGLLTYYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLQSKVGLLTYYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK
               70        80        90       100      

>>CCDS44029.1 BPY2B gene_id:442867|Hs108|chrY             (106 aa)
 initn: 704 init1: 704 opt: 704  Z-score: 996.8  bits: 189.5 E(32554): 3.4e-49
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KB7 MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNT
               10        20        30        40        50        60

               70        80        90       100      
pF1KB7 LLQSKVGLLTYYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLQSKVGLLTYYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK
               70        80        90       100      

>>CCDS44030.1 BPY2C gene_id:442868|Hs108|chrY             (106 aa)
 initn: 704 init1: 704 opt: 704  Z-score: 996.8  bits: 189.5 E(32554): 3.4e-49
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KB7 MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNT
               10        20        30        40        50        60

               70        80        90       100      
pF1KB7 LLQSKVGLLTYYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLQSKVGLLTYYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK
               70        80        90       100      




106 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:22:40 2016 done: Fri Nov  4 20:22:40 2016
 Total Scan time:  1.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]