FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7207, 223 aa
  1>>>pF1KB7207 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2103+/-0.000819; mu= 2.3730+/- 0.050
 mean_var=207.3134+/-40.108, 0's: 0 Z-trim(115.4): 19  B-trim: 0 in 0/53
 Lambda= 0.089076
 statistics sampled from 15945 (15959) to 15945 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.49), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS43337.1 POLR3G gene_id:10622|Hs108|chr5        ( 223) 1522 207.0 7.6e-54
CCDS72875.1 POLR3GL gene_id:84265|Hs108|chr1       ( 218)  680 98.8 2.8e-21


>>CCDS43337.1 POLR3G gene_id:10622|Hs108|chr5             (223 aa)
 initn: 1522 init1: 1522 opt: 1522  Z-score: 1080.1  bits: 207.0 E(32554): 7.6e-54
Smith-Waterman score: 1522; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KB7 MAGNKGRGRAAYTFNIEAVGFSKGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEEYMLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAGNKGRGRAAYTFNIEAVGFSKGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEEYMLAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KQELRETMKRMPYFIETPEERQDIERYSKRYMKVYKEEWIPDWRRLPREMMPRNKCKKAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQELRETMKRMPYFIETPEERQDIERYSKRYMKVYKEEWIPDWRRLPREMMPRNKCKKAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PKPKKAKDAGKGTPLTNTEDVLKKMEELEKRGDGEKSDEENEEKEGSKEKSKEGDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PKPKKAKDAGKGTPLTNTEDVLKKMEELEKRGDGEKSDEENEEKEGSKEKSKEGDDDDDD
              130       140       150       160       170       180

              190       200       210       220   
pF1KB7 DAAEQEEYDEEEQEEENDYINSYFEDGDDFGADSDDNMDEATY
       :::::::::::::::::::::::::::::::::::::::::::
CCDS43 DAAEQEEYDEEEQEEENDYINSYFEDGDDFGADSDDNMDEATY
              190       200       210       220   

>>CCDS72875.1 POLR3GL gene_id:84265|Hs108|chr1            (218 aa)
 initn: 670 init1: 419 opt: 680  Z-score: 495.5  bits: 98.8 E(32554): 2.8e-21
Smith-Waterman score: 680; 49.6% identity (70.4% similar) in 226 aa overlap (3-223:6-218)

                  10        20        30        40        50       
pF1KB7    MAGNKGRGRAAYTFNIEAVGFSKGEKLPDVVLKPPPLFPDTDYKPVPLKTGEGEEYM
            :..::::.  :::.::::..::. ::  .:.: ::::  ...:::: .::  ::.
CCDS72 MASRGGGRGRGRGQLTFNVEAVGIGKGDALPPPTLQPSPLFPPLEFRPVPLPSGEEGEYV
               10        20        30        40        50        60

        60        70        80        90           100       110   
pF1KB7 LALKQELRETMKRMPYFIETPEERQDIERYSKRYMKV----YKEEWIPDWRRLPREMMPR
       :::::::: .:...::::.    ..:.:::: .:.         .: :::::::::.  :
CCDS72 LALKQELRGAMRQLPYFIRPAVPKRDVERYSDKYQMSGPIDNAIDWNPDWRRLPRELKIR
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB7 -NKCKKAGPKPKKAKDAGKGTPLTNTEDVLKKMEELEKRGDGEKSDEENEEKEGSKEKSK
         : .:        :   : :   . :....:.: :::. . : ..::.::::  .:: .
CCDS72 VRKLQKERITILLPKRPPKTT--EDKEETIQKLETLEKKEE-EVTSEEDEEKEEEEEKEE
              130       140         150        160       170       

            180       190       200       210       220   
pF1KB7 EGDDDDDDDAAEQEEYDEEEQEEENDYINSYFEDGDDFGADSDDNMDEATY
       :          :.:::::::.:::.::: :::..:.:::.::::::::: :
CCDS72 E----------EEEEYDEEEHEEETDYIMSYFDNGEDFGGDSDDNMDEAIY
                 180       190       200       210        




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:58:21 2016 done: Fri Nov  4 05:58:22 2016
 Total Scan time:  2.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]