Result of FASTA (omim) for
pF1KB7187
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7187, 539 aa
1>>>pF1KB7187 539 - 539 aa - 539 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8895+/-0.00033; mu= 4.4539+/- 0.021
mean_var=248.8759+/-50.117, 0's: 0 Z-trim(123.9): 11 B-trim: 1941 in 1/59
Lambda= 0.081299
statistics sampled from 44519 (44540) to 44519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.522), width: 16
Scan time: 12.700
The best scores are: opt bits E(85289)
NP_006565 (OMIM: 606775) chondroitin sulfate prote ( 539) 3723 449.5 1.2e-125
NP_001193872 (OMIM: 606775) chondroitin sulfate pr ( 566) 3368 407.9 4.3e-113
NP_001193873 (OMIM: 606775) chondroitin sulfate pr ( 477) 3190 386.9 7.2e-107
NP_001193871 (OMIM: 606775) chondroitin sulfate pr ( 401) 2802 341.4 3.2e-93
NP_001193874 (OMIM: 606775) chondroitin sulfate pr ( 428) 2447 299.8 1.1e-80
>>NP_006565 (OMIM: 606775) chondroitin sulfate proteogly (539 aa)
initn: 3723 init1: 3723 opt: 3723 Z-score: 2376.7 bits: 449.5 E(85289): 1.2e-125
Smith-Waterman score: 3723; 100.0% identity (100.0% similar) in 539 aa overlap (1-539:1-539)
10 20 30 40 50 60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
490 500 510 520 530
>>NP_001193872 (OMIM: 606775) chondroitin sulfate proteo (566 aa)
initn: 3709 init1: 3365 opt: 3368 Z-score: 2151.4 bits: 407.9 E(85289): 4.3e-113
Smith-Waterman score: 3659; 95.2% identity (95.2% similar) in 566 aa overlap (1-539:1-566)
10 20 30 40 50 60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
430 440 450 460 470 480
490 500 510
pF1KB7 EGSHPN---------------------------DDPSAPHKIQEVLKSCLKEEESFNIQN
:::::: :::::::::::::::::::::::::::
NP_001 EGSHPNVRKLCNTPRTSSPHARALAHYDNVICQDDPSAPHKIQEVLKSCLKEEESFNIQN
490 500 510 520 530 540
520 530
pF1KB7 SMSPKLEGGKGDQADLDVNCLQNNLT
::::::::::::::::::::::::::
NP_001 SMSPKLEGGKGDQADLDVNCLQNNLT
550 560
>>NP_001193873 (OMIM: 606775) chondroitin sulfate proteo (477 aa)
initn: 3190 init1: 3190 opt: 3190 Z-score: 2039.6 bits: 386.9 E(85289): 7.2e-107
Smith-Waterman score: 3190; 100.0% identity (100.0% similar) in 460 aa overlap (1-460:1-460)
10 20 30 40 50 60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
::::::::::::::::::::::::::::::::::::::::
NP_001 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTKMILVLPTKSRRFSSPA
430 440 450 460 470
490 500 510 520 530
pF1KB7 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
>>NP_001193871 (OMIM: 606775) chondroitin sulfate proteo (401 aa)
initn: 2802 init1: 2802 opt: 2802 Z-score: 1794.6 bits: 341.4 E(85289): 3.2e-93
Smith-Waterman score: 2802; 100.0% identity (100.0% similar) in 401 aa overlap (139-539:1-401)
110 120 130 140 150 160
pF1KB7 GGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP
::::::::::::::::::::::::::::::
NP_001 MPPAIPEATEASGPPSPTPGDKLSPASELP
10 20 30
170 180 190 200 210 220
pF1KB7 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB7 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB7 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
280 290 300 310 320 330
470 480 490 500 510 520
pF1KB7 LHNDNFSLSTIAEGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHNDNFSLSTIAEGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQAD
340 350 360 370 380 390
530
pF1KB7 LDVNCLQNNLT
:::::::::::
NP_001 LDVNCLQNNLT
400
>>NP_001193874 (OMIM: 606775) chondroitin sulfate proteo (428 aa)
initn: 2788 init1: 2444 opt: 2447 Z-score: 1569.2 bits: 299.8 E(85289): 1.1e-80
Smith-Waterman score: 2738; 93.7% identity (93.7% similar) in 428 aa overlap (139-539:1-428)
110 120 130 140 150 160
pF1KB7 GGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP
::::::::::::::::::::::::::::::
NP_001 MPPAIPEATEASGPPSPTPGDKLSPASELP
10 20 30
170 180 190 200 210 220
pF1KB7 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB7 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB7 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
280 290 300 310 320 330
470 480 490 500
pF1KB7 LHNDNFSLSTIAEGSHPN---------------------------DDPSAPHKIQEVLKS
:::::::::::::::::: :::::::::::::::
NP_001 LHNDNFSLSTIAEGSHPNVRKLCNTPRTSSPHARALAHYDNVICQDDPSAPHKIQEVLKS
340 350 360 370 380 390
510 520 530
pF1KB7 CLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
::::::::::::::::::::::::::::::::::::::
NP_001 CLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
400 410 420
539 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:43:02 2016 done: Fri Nov 4 05:43:04 2016
Total Scan time: 12.700 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]