Result of FASTA (ccds) for
pF1KB7187
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7187, 539 aa
1>>>pF1KB7187 539 - 539 aa - 539 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1159+/-0.000819; mu= 3.0349+/- 0.050
mean_var=229.7216+/-46.353, 0's: 0 Z-trim(116.3): 16 B-trim: 174 in 1/51
Lambda= 0.084620
statistics sampled from 16847 (16860) to 16847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.518), width: 16
Scan time: 4.390
The best scores are: opt bits E(32554)
CCDS2757.1 CSPG5 gene_id:10675|Hs108|chr3 ( 539) 3723 467.1 2.4e-131
CCDS56253.1 CSPG5 gene_id:10675|Hs108|chr3 ( 566) 3368 423.7 2.7e-118
CCDS74930.1 CSPG5 gene_id:10675|Hs108|chr3 ( 477) 3190 402.0 8.3e-112
CCDS56252.1 CSPG5 gene_id:10675|Hs108|chr3 ( 401) 2802 354.5 1.3e-97
>>CCDS2757.1 CSPG5 gene_id:10675|Hs108|chr3 (539 aa)
initn: 3723 init1: 3723 opt: 3723 Z-score: 2471.7 bits: 467.1 E(32554): 2.4e-131
Smith-Waterman score: 3723; 100.0% identity (100.0% similar) in 539 aa overlap (1-539:1-539)
10 20 30 40 50 60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
430 440 450 460 470 480
490 500 510 520 530
pF1KB7 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
490 500 510 520 530
>>CCDS56253.1 CSPG5 gene_id:10675|Hs108|chr3 (566 aa)
initn: 3709 init1: 3365 opt: 3368 Z-score: 2237.1 bits: 423.7 E(32554): 2.7e-118
Smith-Waterman score: 3659; 95.2% identity (95.2% similar) in 566 aa overlap (1-539:1-566)
10 20 30 40 50 60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
430 440 450 460 470 480
490 500 510
pF1KB7 EGSHPN---------------------------DDPSAPHKIQEVLKSCLKEEESFNIQN
:::::: :::::::::::::::::::::::::::
CCDS56 EGSHPNVRKLCNTPRTSSPHARALAHYDNVICQDDPSAPHKIQEVLKSCLKEEESFNIQN
490 500 510 520 530 540
520 530
pF1KB7 SMSPKLEGGKGDQADLDVNCLQNNLT
::::::::::::::::::::::::::
CCDS56 SMSPKLEGGKGDQADLDVNCLQNNLT
550 560
>>CCDS74930.1 CSPG5 gene_id:10675|Hs108|chr3 (477 aa)
initn: 3190 init1: 3190 opt: 3190 Z-score: 2120.7 bits: 402.0 E(32554): 8.3e-112
Smith-Waterman score: 3190; 100.0% identity (100.0% similar) in 460 aa overlap (1-460:1-460)
10 20 30 40 50 60
pF1KB7 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGRAGGGGPGRGPPPLLLFLGAALVLASGAVPAREAGSAVEAEELVKGSPAWEPPANDTR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EEAGPPAAGEDEASWTAPGGELAGPEEVLQESAAVTGTAWLEADSPGLGGVTAEAGSGDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELPKESPLEVWLNLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSFPGSPGTSENHPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDAVGGGDLEDENEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGRDLASSENGTECR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCESIITDFQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSELHNDNFSLSTIA
::::::::::::::::::::::::::::::::::::::::
CCDS74 VMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTKMILVLPTKSRRFSSPA
430 440 450 460 470
490 500 510 520 530
pF1KB7 EGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQADLDVNCLQNNLT
>>CCDS56252.1 CSPG5 gene_id:10675|Hs108|chr3 (401 aa)
initn: 2802 init1: 2802 opt: 2802 Z-score: 1865.8 bits: 354.5 E(32554): 1.3e-97
Smith-Waterman score: 2802; 100.0% identity (100.0% similar) in 401 aa overlap (139-539:1-401)
110 120 130 140 150 160
pF1KB7 GGVTAEAGSGDAQALPATLQAPHEVLGQSIMPPAIPEATEASGPPSPTPGDKLSPASELP
::::::::::::::::::::::::::::::
CCDS56 MPPAIPEATEASGPPSPTPGDKLSPASELP
10 20 30
170 180 190 200 210 220
pF1KB7 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KESPLEVWLNLGGSTPDPQGPELTYPFQGTLEPQPASDIIDIDYFEGLDGEGRGADLGSF
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PGSPGTSENHPDTEGETPSWSLLDLYDDFTPFDESDFYPTTSFYDDLDEEEEEEEDDKDA
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VGGGDLEDENELLVPTGKPGLGPGTGQPTSRWHAVPPQHTLGSVPGSSIALRPRPGEPGR
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB7 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DLASSENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQCYLVENIGAFCRCNTQDYIWHK
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB7 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTENTKLRRTNKFRTPSE
280 290 300 310 320 330
470 480 490 500 510 520
pF1KB7 LHNDNFSLSTIAEGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LHNDNFSLSTIAEGSHPNDDPSAPHKIQEVLKSCLKEEESFNIQNSMSPKLEGGKGDQAD
340 350 360 370 380 390
530
pF1KB7 LDVNCLQNNLT
:::::::::::
CCDS56 LDVNCLQNNLT
400
539 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:43:01 2016 done: Fri Nov 4 05:43:02 2016
Total Scan time: 4.390 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]