FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7176, 365 aa
  1>>>pF1KB7176 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5944+/-0.000824; mu= -0.3483+/- 0.050
 mean_var=304.7710+/-62.187, 0's: 0 Z-trim(117.8): 78  B-trim: 169 in 1/53
 Lambda= 0.073466
 statistics sampled from 18516 (18595) to 18516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.571), width:  16
 Scan time:  3.580

The best scores are:                                      opt bits E(32554)
CCDS6428.1 FOXH1 gene_id:8928|Hs108|chr8           ( 365) 2648 293.4 2.1e-79


>>CCDS6428.1 FOXH1 gene_id:8928|Hs108|chr8                (365 aa)
 initn: 2648 init1: 2648 opt: 2648  Z-score: 1539.0  bits: 293.4 E(32554): 2.1e-79
Smith-Waterman score: 2648; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KB7 MGPCSGSRLGPPEAESPSQPPKRRKKRYLRHDKPPYTYLAMIALVIQAAPSRRLKLAQII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MGPCSGSRLGPPEAESPSQPPKRRKKRYLRHDKPPYTYLAMIALVIQAAPSRRLKLAQII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RQVQAVFPFFREDYEGWKDSIRHNLSSNRCFRKVPKDPAKPQAKGNFWAVDVSLIPAEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RQVQAVFPFFREDYEGWKDSIRHNLSSNRCFRKVPKDPAKPQAKGNFWAVDVSLIPAEAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RLQNTALCRRWQNGGARGAFAKDLGPYVLHGRPYRPPSPPPPPSEGFSIKSLLGGSGEGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RLQNTALCRRWQNGGARGAFAKDLGPYVLHGRPYRPPSPPPPPSEGFSIKSLLGGSGEGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PWPGLAPQSSPVPAGTGNSGEEAVPTPPLPSSERPLWPLCPLPGPTRVEGETVQGGAIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PWPGLAPQSSPVPAGTGNSGEEAVPTPPLPSSERPLWPLCPLPGPTRVEGETVQGGAIGP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 STLSPEPRAWPLHLLQGTAVPGGRSSGGHRASLWGQLPTSYLPIYTPNVVMPLAPPPTSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 STLSPEPRAWPLHLLQGTAVPGGRSSGGHRASLWGQLPTSYLPIYTPNVVMPLAPPPTSC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PQCPSTSPAYWGVAPETRGPPGLLCDLDALFQGVPPNKSIYDVWVSHPRDLAAPGPGWLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PQCPSTSPAYWGVAPETRGPPGLLCDLDALFQGVPPNKSIYDVWVSHPRDLAAPGPGWLL
              310       320       330       340       350       360

            
pF1KB7 SWCSL
       :::::
CCDS64 SWCSL
            




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:37:33 2016 done: Fri Nov  4 05:37:33 2016
 Total Scan time:  3.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]