FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7123, 311 aa
  1>>>pF1KB7123 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7841+/-0.00073; mu= 13.9545+/- 0.044
 mean_var=79.5560+/-15.795, 0's: 0 Z-trim(110.2): 10  B-trim: 4 in 1/50
 Lambda= 0.143793
 statistics sampled from 11427 (11435) to 11427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.351), width:  16
 Scan time:  2.630

The best scores are:                                      opt bits E(32554)
CCDS2128.1 TMEM177 gene_id:80775|Hs108|chr2        ( 311) 2105 445.8  2e-125


>>CCDS2128.1 TMEM177 gene_id:80775|Hs108|chr2             (311 aa)
 initn: 2105 init1: 2105 opt: 2105  Z-score: 2365.3  bits: 445.8 E(32554): 2e-125
Smith-Waterman score: 2105; 99.4% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KB7 MAGPLWRTAAFVQRHRTGLLVGSCAGLFGVPVSYHLFPDPVVQWLYQYWPQGQPAPLPPQ
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS21 MAGPLWRTAAFVQRHRTGLLVGSCAGLFGVPISYHLFPDPVVQWLYQYWPQGQPAPLPPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LQSLFQEVLQDIGVPSGHCYKPFTTFTFQPVSAGFPRLPAGAVVGIPASFLGDLVINTNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LQSLFQEVLQDIGVPSGHCYKPFTTFTFQPVSAGFPRLPAGAVVGIPASFLGDLVINTNH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVVIHGHTVDWRSPAGARLRASLTLSREAQKFALAREVVYLESSTTAVHALLAPACLAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 PVVIHGHTVDWRSPAGARLRASLTLSREAQKFALAREVVYLESSTTAVHALLAPACLAGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 WALGVGAKYTLGLHAGPMNLRAAFSLVAAVAGFVAYAFSQDSLTHAVESWLDRRTASLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 WALGVGAKYTLGLHAGPMNLRAAFSLVAAVAGFVAYAFSQDSLTHAVESWLDRRTASLSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AYACGGVEFYEKLLSGNLALRSLLGKEGEKLYTPSGNIVPRHLFRIKHLPYTTRRDSVLQ
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS21 AYACGGVEFYEKLLSGNLALRSLLGKDGEKLYTPSGNIVPRHLFRIKHLPYTTRRDSVLQ
              250       260       270       280       290       300

              310 
pF1KB7 MWRGMLNPGRS
       :::::::::::
CCDS21 MWRGMLNPGRS
              310 




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:58:38 2016 done: Fri Nov  4 04:58:38 2016
 Total Scan time:  2.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]