FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7116, 280 aa
  1>>>pF1KB7116 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0006+/-0.000865; mu= 4.8141+/- 0.053
 mean_var=162.3329+/-32.115, 0's: 0 Z-trim(113.0): 3  B-trim: 0 in 0/52
 Lambda= 0.100663
 statistics sampled from 13662 (13663) to 13662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.42), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS205.1 UBXN10 gene_id:127733|Hs108|chr1         ( 280) 1855 280.5 9.3e-76


>>CCDS205.1 UBXN10 gene_id:127733|Hs108|chr1              (280 aa)
 initn: 1855 init1: 1855 opt: 1855  Z-score: 1473.5  bits: 280.5 E(32554): 9.3e-76
Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB7 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
              190       200       210       220       230       240

              250       260       270       280
pF1KB7 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
       ::::::::::::::::::::::::::::::::::::::::
CCDS20 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
              250       260       270       280




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:53:42 2016 done: Fri Nov  4 04:53:43 2016
 Total Scan time:  2.650 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]