FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7115, 279 aa
  1>>>pF1KB7115 279 - 279 aa - 279 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1147+/-0.000714; mu= 12.9343+/- 0.043
 mean_var=109.5478+/-22.356, 0's: 0 Z-trim(113.1): 52  B-trim: 74 in 1/50
 Lambda= 0.122538
 statistics sampled from 13753 (13805) to 13753 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.424), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS12417.1 PLEKHF1 gene_id:79156|Hs108|chr19      ( 279) 1915 348.5 3.1e-96
CCDS6267.1 PLEKHF2 gene_id:79666|Hs108|chr8        ( 249) 1002 187.0 1.1e-47


>>CCDS12417.1 PLEKHF1 gene_id:79156|Hs108|chr19           (279 aa)
 initn: 1915 init1: 1915 opt: 1915  Z-score: 1841.1  bits: 348.5 E(32554): 3.1e-96
Smith-Waterman score: 1915; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)

               10        20        30        40        50        60
pF1KB7 MVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFVVSAASATERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFVVSAASATERQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EWISHIEECVRRQLRATGRPPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EWISHIEECVRRQLRATGRPPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQEEAEEQGAGSPGQPAHLARPICG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQEEAEEQGAGSPGQPAHLARPICG
              190       200       210       220       230       240

              250       260       270         
pF1KB7 ASSGDDDDSDEDKEGSRDGDWPSSVEFYASGVAWSAFHS
       :::::::::::::::::::::::::::::::::::::::
CCDS12 ASSGDDDDSDEDKEGSRDGDWPSSVEFYASGVAWSAFHS
              250       260       270         

>>CCDS6267.1 PLEKHF2 gene_id:79666|Hs108|chr8             (249 aa)
 initn: 1064 init1: 958 opt: 1002  Z-score: 969.4  bits: 187.0 E(32554): 1.1e-47
Smith-Waterman score: 1002; 56.0% identity (78.6% similar) in 252 aa overlap (1-252:1-249)

               10        20        30        40        50        60
pF1KB7 MVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFND
       :::.:::.: :..::. ::.::::.::::..:::::.::::::: :::: : : ::::::
CCDS62 MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFVVSAASATERQ
       :::::.::..:.:: .:::::::.::.. . .  . .: :.:::  :::.: ::.:::..
CCDS62 ILVYGNIVIQKKKYNKQHIIPLENVTIDSIKDEGDLRNGWLIKTPTKSFAVYAATATEKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EWISHIEECVRRQLRATGRPPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGF
       ::..::..::   :  .:. ::.:::: :.::. . .:::: ...:. ..::::::::::
CCDS62 EWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQEEAEEQGAGSPGQPAHLARPICG
       :::. ::..:::::  : ::::.:..::  :.:    . :  : : : .    :  :.  
CCDS62 VVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSA---GDMATCQPARSDSYSQSLKSPLND
              190       200       210          220       230       

              250       260       270         
pF1KB7 ASSGDDDDSDEDKEGSRDGDWPSSVEFYASGVAWSAFHS
        :. ::::.. :                           
CCDS62 MSDDDDDDDSSD                           
       240                                    




279 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:52:27 2016 done: Fri Nov  4 04:52:28 2016
 Total Scan time:  2.760 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]