Result of FASTA (ccds) for
pF1KB7110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7110, 260 aa
1>>>pF1KB7110 260 - 260 aa - 260 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7256+/-0.000956; mu= 12.7589+/- 0.058
mean_var=73.2185+/-14.916, 0's: 0 Z-trim(105.6): 53 B-trim: 0 in 0/52
Lambda= 0.149887
statistics sampled from 8445 (8498) to 8445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.261), width: 16
Scan time: 2.300
The best scores are: opt bits E(32554)
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 1701 377.0 7.2e-105
CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17 ( 232) 529 123.5 1.3e-28
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 485 114.0 9.5e-26
CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 ( 234) 350 84.8 5.7e-17
CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 ( 283) 350 84.9 6.8e-17
CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 ( 257) 338 82.3 3.8e-16
CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 ( 259) 312 76.6 1.9e-14
CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 ( 428) 298 73.7 2.3e-13
CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 ( 325) 284 70.6 1.5e-12
CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19 ( 707) 278 69.5 7.2e-12
CCDS2330.1 KCTD18 gene_id:130535|Hs108|chr2 ( 426) 275 68.7 7.3e-12
CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 ( 229) 267 66.9 1.4e-11
CCDS10661.1 KCTD13 gene_id:253980|Hs108|chr16 ( 329) 269 67.4 1.4e-11
CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 ( 272) 267 66.9 1.7e-11
CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12 ( 313) 266 66.7 2.2e-11
CCDS55117.1 KCTD7 gene_id:154881|Hs108|chr7 ( 288) 261 65.6 4.3e-11
CCDS5534.1 KCTD7 gene_id:154881|Hs108|chr7 ( 289) 261 65.6 4.3e-11
CCDS60908.1 KCTD14 gene_id:65987|Hs108|chr11 ( 225) 254 64.1 9.9e-11
>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa)
initn: 1701 init1: 1701 opt: 1701 Z-score: 1996.2 bits: 377.0 E(32554): 7.2e-105
Smith-Waterman score: 1701; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDS
190 200 210 220 230 240
250 260
pF1KB7 SHPHALDFMNNKIIRLIRYR
::::::::::::::::::::
CCDS31 SHPHALDFMNNKIIRLIRYR
250 260
>>CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17 (232 aa)
initn: 457 init1: 246 opt: 529 Z-score: 627.3 bits: 123.5 E(32554): 1.3e-28
Smith-Waterman score: 529; 39.7% identity (68.2% similar) in 239 aa overlap (28-259:1-232)
10 20 30 40 50
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSG--KMPTKRDSQG--NCFIDRDGKVF
:::::: . :: . .::: . :::::::.:
CCDS32 MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAF
10 20 30
60 70 80 90 100 110
pF1KB7 RYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEV-ELSKAEKNAMLNIT
:.:::::: ..::::. . : .::: ::::::..::..::.: :. . . : :.:.
CCDS32 RHILNFLRLGRLDLPRGYGETALLRAEADFYQIRPLLDALRELEASQGTPAPTAALLHAD
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB7 LNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSIT
.. . :::..:..:. : ::: ....: ::.: :. : : .. : ..:. . .
CCDS32 VDVSPRLVHFSARRGPHHYELSSVQVDTFRANLFCTDSECLGALRAR-FGVASGDRAEGS
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 SHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVV-PANK-QINSFQVFVEEVLKIALS
:.. :.:. ::: :: . .:. ::. :... .. . :.::::..::
CCDS32 PHFH------LEWAPRPVELPEVEYGRLGLQPLWTGGPGERREVVGTPSFLEEVLRVALE
160 170 180 190 200
240 250 260
pF1KB7 DGFCIDSSHPHALDFMNNKIIRLIRYR
:: .:: : :..:.. .:..:.
CCDS32 HGFRLDSVFPDPEDLLNSRSLRFVRH
210 220 230
>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa)
initn: 476 init1: 476 opt: 485 Z-score: 575.8 bits: 114.0 E(32554): 9.5e-26
Smith-Waterman score: 485; 71.4% identity (89.8% similar) in 98 aa overlap (1-98:10-107)
10 20 30 40 50
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDR
:.::.::::::.::::::.::: .:::::::::.: .:: :: ::: ::::
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAM
:: .:::.:::::::.: :: ::.:. :::.::::::..:::. :..
CCDS28 DGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 LNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNL
CCDS28 VELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFG
130 140 150 160 170 180
>>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 (234 aa)
initn: 372 init1: 221 opt: 350 Z-score: 418.1 bits: 84.8 E(32554): 5.7e-17
Smith-Waterman score: 350; 46.7% identity (81.3% similar) in 107 aa overlap (4-109:57-163)
10 20 30
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
:. ..:::..::.::::::..::: .. .:
CCDS12 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLF
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
.: : :: . . ::::::..:::.:.:::::.: ::.::....:: .:: .::.::.
CCDS12 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB7 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
.. :.. . : . ...
CCDS12 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN
150 160 170 180 190 200
>>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 (283 aa)
initn: 372 init1: 221 opt: 350 Z-score: 416.8 bits: 84.9 E(32554): 6.8e-17
Smith-Waterman score: 350; 46.7% identity (81.3% similar) in 107 aa overlap (4-109:57-163)
10 20 30
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
:. ..:::..::.::::::..::: .. .:
CCDS46 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLF
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
.: : :: . . ::::::..:::.:.:::::.: ::.::....:: .:: .::.::.
CCDS46 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB7 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
.. :.. . : . ...
CCDS46 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN
150 160 170 180 190 200
>>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 (257 aa)
initn: 338 init1: 208 opt: 338 Z-score: 403.4 bits: 82.3 E(32554): 3.8e-16
Smith-Waterman score: 338; 50.5% identity (82.1% similar) in 95 aa overlap (4-97:31-125)
10 20 30
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
:. ..:::..::.::::::..:.: .: .:
CCDS11 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
.: : :: . . ::::::..:::::::::::.: .:.::... :: .:: ..:.::.
CCDS11 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
. ..
CCDS11 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN
130 140 150 160 170 180
>>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 (259 aa)
initn: 343 init1: 299 opt: 312 Z-score: 373.0 bits: 76.6 E(32554): 1.9e-14
Smith-Waterman score: 312; 42.9% identity (73.7% similar) in 133 aa overlap (5-135:35-166)
10 20 30
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFS
.:::::: :: :. :::..::..: .. .
CCDS93 INRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVN
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 GKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE
::. :..:. :::::: .::..:::::...: ::: :.: :: .::.:.:.. : :
CCDS93 GKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 ALQEK-EVELSKAEKNAMLNITLNQ-RVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
.. . : : .....:.:: :. : : ... .::.. :
CCDS93 EVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFC-NAPDFISKIKSRIVLVSKSRLDGF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 CLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVP
CCDS93 PEEFSISSNIIQFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLTSLD
190 200 210 220 230 240
>>CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 (428 aa)
initn: 303 init1: 209 opt: 298 Z-score: 353.3 bits: 73.7 E(32554): 2.3e-13
Smith-Waterman score: 298; 45.8% identity (67.3% similar) in 107 aa overlap (5-107:27-133)
10 20 30
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMP
. :::::..: : .:: :.: :.: ::: :
CCDS34 MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRD
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 TK----RDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE
: .::.: :::::: .:::::..:: .. ::. : : : :.:::...:. :..
CCDS34 TANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 ALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCL
: :.. : :
CCDS34 LLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREG
130 140 150 160 170 180
>>CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 (325 aa)
initn: 300 init1: 183 opt: 284 Z-score: 338.8 bits: 70.6 E(32554): 1.5e-12
Smith-Waterman score: 284; 45.8% identity (74.0% similar) in 96 aa overlap (3-96:34-129)
10 20 30
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAM
: . :::::..:.: :..: :::.: :
CCDS94 ADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLLWRM
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 FSGKMPTK--RDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQ
:. ..: . :::.: :.:::: .:::::..:: .: ::. : : . :.:::.....
CCDS94 FTQQQPQELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAEYFELP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 PLIEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFS
:.. :
CCDS94 ELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPTLELAS
130 140 150 160 170 180
>>CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19 (707 aa)
initn: 290 init1: 220 opt: 278 Z-score: 326.5 bits: 69.5 E(32554): 7.2e-12
Smith-Waterman score: 278; 35.9% identity (61.5% similar) in 195 aa overlap (5-190:21-207)
10 20 30 40
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQ
: :::::: ..:: ::: .:::......::.. : .:
CCDS12 MAAAATAAEGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDET
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 GNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELS
: ::::: :: :::::::..:: :. . .::. ::.:: . ::.. :: .: ::.
CCDS12 GAIFIDRDPTVFAPILNFLRTKELD-PRGVHGSSLLH-EAQFYGLTPLVRRLQLRE-ELD
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 KAE-KNAMLNITLNQRVQTVHFTVREA---PQIYSLSSSSMEVFNANIFSTSCLFLKLLG
.. :...: : : :. :.. :: .:.. : .: . . :::
CCDS12 RSSCGNVLFNGYLPPPVFPVKRRNRHSLVGPQ--QLGGRPAPVRRSNTMPPNLGNAGLLG
120 130 140 150 160 170
170 180 190 200 210
pF1KB7 SKLFYCSNGNLSSITSHLQDPNHLTL-----DWVANVEGLPEEEYTKQNLKRLWVVPANK
: .. . : ... ..:. . : .:.:
CCDS12 RML---DEKTPPSPSGQPEEPGMVRLVCGHHNWIAVAYTQFLVCYRLKEASGWQLVFSSP
180 190 200 210 220 230
220 230 240 250 260
pF1KB7 QINSFQVFVEEVLKIALSDGFCIDSSHPHALDFMNNKIIRLIRYR
CCDS12 RLDWPIERLALTARVHGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEA
240 250 260 270 280 290
260 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:45:35 2016 done: Fri Nov 4 04:45:35 2016
Total Scan time: 2.300 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]