FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7103, 219 aa
  1>>>pF1KB7103 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4066+/-0.000609; mu= 19.7065+/- 0.037
 mean_var=70.3193+/-14.630, 0's: 0 Z-trim(112.9): 9  B-trim: 441 in 1/50
 Lambda= 0.152946
 statistics sampled from 13624 (13629) to 13624 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.419), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS480.1 TMEM125 gene_id:128218|Hs108|chr1        ( 219) 1413 319.8 8.2e-88


>>CCDS480.1 TMEM125 gene_id:128218|Hs108|chr1             (219 aa)
 initn: 1413 init1: 1413 opt: 1413  Z-score: 1690.0  bits: 319.8 E(32554): 8.2e-88
Smith-Waterman score: 1413; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB7 MSEQEAQAPGGRGLPPDMLAEQVELWWSQQPRRSALCFVVAVGLVAGCGAGGVALLSTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MSEQEAQAPGGRGLPPDMLAEQVELWWSQQPRRSALCFVVAVGLVAGCGAGGVALLSTTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SRSGEWRLATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAHHVALLRSGGGADALVVLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SRSGEWRLATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAHHVALLRSGGGADALVVLLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GLVLLVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCPSIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GLVLLVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCPSIC
              130       140       150       160       170       180

              190       200       210         
pF1KB7 MATPSTHSGHGGHGSIFSISGQLSAGRRHETTSSIASLI
       :::::::::::::::::::::::::::::::::::::::
CCDS48 MATPSTHSGHGGHGSIFSISGQLSAGRRHETTSSIASLI
              190       200       210         




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:43:49 2016 done: Fri Nov  4 04:43:49 2016
 Total Scan time:  2.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]