FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7101, 213 aa
  1>>>pF1KB7101 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9564+/-0.000635; mu= 9.6269+/- 0.039
 mean_var=145.9178+/-28.824, 0's: 0 Z-trim(117.5): 4  B-trim: 0 in 0/53
 Lambda= 0.106174
 statistics sampled from 18211 (18215) to 18211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.56), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS43957.1 FAM156B gene_id:727866|Hs108|chrX      ( 213) 1473 235.6 1.8e-62
CCDS35297.1 FAM156A gene_id:29057|Hs108|chrX       ( 213) 1473 235.6 1.8e-62


>>CCDS43957.1 FAM156B gene_id:727866|Hs108|chrX           (213 aa)
 initn: 1473 init1: 1473 opt: 1473  Z-score: 1235.1  bits: 235.6 E(32554): 1.8e-62
Smith-Waterman score: 1473; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB7 MDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSPGPGPSQAVPLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSPGPGPSQAVPLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GLLRQRYREEKTLEERRWERLEFLQRKKAFLRHVRRRHRDHMAPYAVGREARISPLGDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GLLRQRYREEKTLEERRWERLEFLQRKKAFLRHVRRRHRDHMAPYAVGREARISPLGDRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QNRFRCECRYCQSHRPNLSGIPGESNRAPHPSSWETLVQGLSGLTLSLGTNQPGPLPEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QNRFRCECRYCQSHRPNLSGIPGESNRAPHPSSWETLVQGLSGLTLSLGTNQPGPLPEAA
              130       140       150       160       170       180

              190       200       210   
pF1KB7 LQPQETEEKRQRERQQESKIMFQRLLKQWLEEN
       :::::::::::::::::::::::::::::::::
CCDS43 LQPQETEEKRQRERQQESKIMFQRLLKQWLEEN
              190       200       210   

>>CCDS35297.1 FAM156A gene_id:29057|Hs108|chrX            (213 aa)
 initn: 1473 init1: 1473 opt: 1473  Z-score: 1235.1  bits: 235.6 E(32554): 1.8e-62
Smith-Waterman score: 1473; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB7 MDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSPGPGPSQAVPLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSPGPGPSQAVPLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GLLRQRYREEKTLEERRWERLEFLQRKKAFLRHVRRRHRDHMAPYAVGREARISPLGDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GLLRQRYREEKTLEERRWERLEFLQRKKAFLRHVRRRHRDHMAPYAVGREARISPLGDRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QNRFRCECRYCQSHRPNLSGIPGESNRAPHPSSWETLVQGLSGLTLSLGTNQPGPLPEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QNRFRCECRYCQSHRPNLSGIPGESNRAPHPSSWETLVQGLSGLTLSLGTNQPGPLPEAA
              130       140       150       160       170       180

              190       200       210   
pF1KB7 LQPQETEEKRQRERQQESKIMFQRLLKQWLEEN
       :::::::::::::::::::::::::::::::::
CCDS35 LQPQETEEKRQRERQQESKIMFQRLLKQWLEEN
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:42:42 2016 done: Fri Nov  4 04:42:43 2016
 Total Scan time:  2.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]