FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7089, 152 aa
  1>>>pF1KB7089 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7241+/-0.000676; mu= 7.4535+/- 0.042
 mean_var=121.4700+/-24.396, 0's: 0 Z-trim(115.4): 5  B-trim: 489 in 1/51
 Lambda= 0.116370
 statistics sampled from 15986 (15989) to 15986 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.491), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS7741.1 PHLDA2 gene_id:7262|Hs108|chr11         ( 152) 1020 180.7 3.1e-46
CCDS1412.1 PHLDA3 gene_id:23612|Hs108|chr1         ( 127)  368 71.2 2.4e-13


>>CCDS7741.1 PHLDA2 gene_id:7262|Hs108|chr11              (152 aa)
 initn: 1020 init1: 1020 opt: 1020  Z-score: 943.6  bits: 180.7 E(32554): 3.1e-46
Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KB7 MKSPDEVLREGELEKRSDSLFQLWKKKRGVLTSDRLSLFPASPRARPKELRFHSILKVDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MKSPDEVLREGELEKRSDSLFQLWKKKRGVLTSDRLSLFPASPRARPKELRFHSILKVDC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VERTGKYVYFTIVTTDHKEIDFRCAGESCWNAAIALALIDFQNRRALQDFRSRQERTAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VERTGKYVYFTIVTTDHKEIDFRCAGESCWNAAIALALIDFQNRRALQDFRSRQERTAPA
               70        80        90       100       110       120

              130       140       150  
pF1KB7 APAEDAVAAAAAAPSEPSEPSRPSPQPKPRTP
       ::::::::::::::::::::::::::::::::
CCDS77 APAEDAVAAAAAAPSEPSEPSRPSPQPKPRTP
              130       140       150  

>>CCDS1412.1 PHLDA3 gene_id:23612|Hs108|chr1              (127 aa)
 initn: 369 init1: 165 opt: 368  Z-score: 353.1  bits: 71.2 E(32554): 2.4e-13
Smith-Waterman score: 368; 55.5% identity (74.5% similar) in 110 aa overlap (7-114:9-118)

                 10        20        30        40         50       
pF1KB7   MKSPDEVLREGELEKRSDSLFQLWKKKRGVLTSDRLSLFPASPRA-RPKELRFHSILK
               ::.:: ::::: .:.::::.:: :::   :.:: :.  . ::::: :  :  
CCDS14 MTAAATATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKA
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KB7 VDCVERTGKYVYFTIVTTDHKEIDFRCAGES-CWNAAIALALIDFQNRRALQDFRSRQER
       :.::: ::...:::.::    ::::::  :.  ::: :.:.:. :.:..:.:  :.::  
CCDS14 VECVESTGRHIYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSL
               70        80        90       100       110       120

        120       130       140       150  
pF1KB7 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPRTP
                                           
CCDS14 GTGTLVS                             
                                           




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:36:38 2016 done: Fri Nov  4 04:36:39 2016
 Total Scan time:  1.810 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]