Result of FASTA (omim) for
pF1KB7087
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7087, 134 aa
1>>>pF1KB7087 134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 3.9149+/-0.00034; mu= 18.7041+/- 0.021
mean_var=54.4239+/-11.014, 0's: 0 Z-trim(113.5): 20 B-trim: 0 in 0/52
Lambda= 0.173852
statistics sampled from 22812 (22824) to 22812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.268), width: 16
Scan time: 4.360
The best scores are: opt bits E(85289)
XP_016880303 (OMIM: 616334) PREDICTED: transmembra ( 134) 832 216.0 1.4e-56
XP_016880305 (OMIM: 616334) PREDICTED: transmembra ( 134) 832 216.0 1.4e-56
XP_016880304 (OMIM: 616334) PREDICTED: transmembra ( 134) 832 216.0 1.4e-56
NP_001093110 (OMIM: 616334) transmembrane protein ( 134) 832 216.0 1.4e-56
NP_060756 (OMIM: 616334) transmembrane protein 100 ( 134) 832 216.0 1.4e-56
>>XP_016880303 (OMIM: 616334) PREDICTED: transmembrane p (134 aa)
initn: 832 init1: 832 opt: 832 Z-score: 1136.7 bits: 216.0 E(85289): 1.4e-56
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB7 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
70 80 90 100 110 120
130
pF1KB7 SQTALVANQRSLFA
::::::::::::::
XP_016 SQTALVANQRSLFA
130
>>XP_016880305 (OMIM: 616334) PREDICTED: transmembrane p (134 aa)
initn: 832 init1: 832 opt: 832 Z-score: 1136.7 bits: 216.0 E(85289): 1.4e-56
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB7 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
70 80 90 100 110 120
130
pF1KB7 SQTALVANQRSLFA
::::::::::::::
XP_016 SQTALVANQRSLFA
130
>>XP_016880304 (OMIM: 616334) PREDICTED: transmembrane p (134 aa)
initn: 832 init1: 832 opt: 832 Z-score: 1136.7 bits: 216.0 E(85289): 1.4e-56
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB7 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
70 80 90 100 110 120
130
pF1KB7 SQTALVANQRSLFA
::::::::::::::
XP_016 SQTALVANQRSLFA
130
>>NP_001093110 (OMIM: 616334) transmembrane protein 100 (134 aa)
initn: 832 init1: 832 opt: 832 Z-score: 1136.7 bits: 216.0 E(85289): 1.4e-56
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB7 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
70 80 90 100 110 120
130
pF1KB7 SQTALVANQRSLFA
::::::::::::::
NP_001 SQTALVANQRSLFA
130
>>NP_060756 (OMIM: 616334) transmembrane protein 100 [Ho (134 aa)
initn: 832 init1: 832 opt: 832 Z-score: 1136.7 bits: 216.0 E(85289): 1.4e-56
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KB7 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
70 80 90 100 110 120
130
pF1KB7 SQTALVANQRSLFA
::::::::::::::
NP_060 SQTALVANQRSLFA
130
134 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:36:12 2016 done: Fri Nov 4 04:36:13 2016
Total Scan time: 4.360 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]