FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7087, 134 aa
  1>>>pF1KB7087 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.0343+/-0.00074; mu= 18.0725+/- 0.044
 mean_var=55.2423+/-11.246, 0's: 0 Z-trim(107.2): 13  B-trim: 0 in 0/48
 Lambda= 0.172559
 statistics sampled from 9414 (9416) to 9414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.289), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS11587.1 TMEM100 gene_id:55273|Hs108|chr17      ( 134)  832 214.5 1.6e-56


>>CCDS11587.1 TMEM100 gene_id:55273|Hs108|chr17           (134 aa)
 initn: 832 init1: 832 opt: 832  Z-score: 1128.2  bits: 214.5 E(32554): 1.6e-56
Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB7 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTEEPIKEILGAPKAHMAATMEKSPKSEVVITTVPLVSEIQLMAATGGTELSCYRCIIPF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AVVVFIAGIVVTAVAYSFNSHGSIISIFGLVVLSSGLFLLASSALCWKVRQRSKKAKRRE
               70        80        90       100       110       120

              130    
pF1KB7 SQTALVANQRSLFA
       ::::::::::::::
CCDS11 SQTALVANQRSLFA
              130    




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:36:12 2016 done: Fri Nov  4 04:36:12 2016
 Total Scan time:  1.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]