FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7086, 133 aa
  1>>>pF1KB7086 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9127+/-0.000802; mu= 12.6941+/- 0.048
 mean_var=54.5270+/-11.562, 0's: 0 Z-trim(106.1): 36  B-trim: 38 in 1/48
 Lambda= 0.173687
 statistics sampled from 8766 (8772) to 8766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.269), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS5593.1 TMEM60 gene_id:85025|Hs108|chr7         ( 133)  894 231.7 1.1e-61


>>CCDS5593.1 TMEM60 gene_id:85025|Hs108|chr7              (133 aa)
 initn: 894 init1: 894 opt: 894  Z-score: 1221.2  bits: 231.7 E(32554): 1.1e-61
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB7 MRMSLAQRVLLTWLFTLLFLIMLVLKLDEKAPWNWFLIFIPVWIFDTILLVLLIVKMAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MRMSLAQRVLLTWLFTLLFLIMLVLKLDEKAPWNWFLIFIPVWIFDTILLVLLIVKMAGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CKSGFDPRHGSHNIKKKAWYLIAMLLKLAFCLALCAKLEQFTTMNLSYVFIPLWALLAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CKSGFDPRHGSHNIKKKAWYLIAMLLKLAFCLALCAKLEQFTTMNLSYVFIPLWALLAGA
               70        80        90       100       110       120

              130   
pF1KB7 LTELGYNVFFVRD
       :::::::::::::
CCDS55 LTELGYNVFFVRD
              130   




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:35:45 2016 done: Fri Nov  4 04:35:45 2016
 Total Scan time:  1.540 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]