FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7085, 129 aa
  1>>>pF1KB7085 129 - 129 aa - 129 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6239+/-0.000651; mu= 14.1467+/- 0.039
 mean_var=51.9847+/-10.274, 0's: 0 Z-trim(109.2): 13  B-trim: 65 in 1/50
 Lambda= 0.177884
 statistics sampled from 10700 (10706) to 10700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.329), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS82655.1 KCNE1B gene_id:102723475|Hs108|chr21   ( 132)  849 224.9 1.1e-59
CCDS13636.1 KCNE1 gene_id:3753|Hs108|chr21         ( 129)  847 224.4 1.5e-59


>>CCDS82655.1 KCNE1B gene_id:102723475|Hs108|chr21        (132 aa)
 initn: 849 init1: 849 opt: 849  Z-score: 1185.3  bits: 224.9 E(32554): 1.1e-59
Smith-Waterman score: 849; 99.2% identity (100.0% similar) in 129 aa overlap (1-129:4-132)

                  10        20        30        40        50       
pF1KB7    MILSNTTAVTPFLTKLWQETVQQGGNMSGLARRSPRSGDGKLEALYVLMVLGFFGFF
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPRMILSNTTAVTPFLTKLWQETVQQGGNMSGLARRSPRSGDGKLEALYVLMVLGFFGFF
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB7 TLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQ
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS82 TLGIMLSYIRSKKLEHSNDPFNVYIESNAWQEKDKAYVQARVLESYRSCYVVENHLAIEQ
               70        80        90       100       110       120

       120         
pF1KB7 PNTHLPETKPSP
       ::::::::::::
CCDS82 PNTHLPETKPSP
              130  

>>CCDS13636.1 KCNE1 gene_id:3753|Hs108|chr21              (129 aa)
 initn: 847 init1: 847 opt: 847  Z-score: 1182.6  bits: 224.4 E(32554): 1.5e-59
Smith-Waterman score: 847; 99.2% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KB7 MILSNTTAVTPFLTKLWQETVQQGGNMSGLARRSPRSGDGKLEALYVLMVLGFFGFFTLG
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS13 MILSNTTAVTPFLTKLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNT
               70        80        90       100       110       120

                
pF1KB7 HLPETKPSP
       :::::::::
CCDS13 HLPETKPSP
                




129 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:29:38 2016 done: Fri Nov  4 04:29:38 2016
 Total Scan time:  1.500 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]