FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7055, 582 aa
  1>>>pF1KB7055 582 - 582 aa - 582 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4261+/-0.000532; mu= -1.2974+/- 0.033
 mean_var=208.8796+/-43.767, 0's: 0 Z-trim(112.9): 21  B-trim: 0 in 0/54
 Lambda= 0.088741
 statistics sampled from 21955 (21971) to 21955 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.258), width:  16
 Scan time:  9.100

The best scores are:                                      opt bits E(85289)
NP_002999 (OMIM: 182141) semenogelin-2 precursor [ ( 582) 3849 506.4  1e-142
NP_002998 (OMIM: 182140) semenogelin-1 preproprote ( 462) 2134 286.8 1.1e-76


>>NP_002999 (OMIM: 182141) semenogelin-2 precursor [Homo  (582 aa)
 initn: 3849 init1: 3849 opt: 3849  Z-score: 2683.1  bits: 506.4 E(85289): 1e-142
Smith-Waterman score: 3849; 99.7% identity (100.0% similar) in 582 aa overlap (1-582:1-582)

               10        20        30        40        50        60
pF1KB7 MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGKKGQHYFGQKDQQHTKSK
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
NP_002 MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGQKGQHYFGQKDQQHTKSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLNQDQEHGRKAHKISYPSSRTEERQLHH
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_002 AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLSQDQEHGRKAHKISYPSSRTEERQLHH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 GGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSH
              490       500       510       520       530       540

              550       560       570       580  
pF1KB7 EQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST
       ::::::::::::::::::::::::::::::::::::::::::
NP_002 EQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST
              550       560       570       580  

>>NP_002998 (OMIM: 182140) semenogelin-1 preproprotein [  (462 aa)
 initn: 2968 init1: 2116 opt: 2134  Z-score: 1498.0  bits: 286.8 E(85289): 1.1e-76
Smith-Waterman score: 2155; 62.2% identity (73.0% similar) in 582 aa overlap (1-582:1-462)

               10        20        30        40        50        60
pF1KB7 MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGKKGQHYFGQKDQQHTKSK
       ::  :.::::::::::::::::::::::::.:::  ::::::.::::: ::: .:.:.::
NP_002 MKPNIIFVLSLLLILEKQAAVMGQKGGSKGRLPSEFSQFPHGQKGQHYSGQKGKQQTESK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK
       ::::::.::::: :::: .:::::::::::::.:::..:::::::::. :::::::::::
NP_002 GSFSIQYTYHVDANDHDQSRKSQQYDLNALHKTTKSQRHLGGSQQLLHNKQEGRDHDKSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG
       :::: .:::::::.::.:::::::::::::::::.::: ::::.:::::::::::.:.::
NP_002 GHFHRVVIHHKGGKAHRGTQNPSQDQGNSPSGKGISSQYSNTEERLWVHGLSKEQTSVSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP
       ::::: ::::::::::::::::.:::::::::::::::::::::.::::::::.:::: :
NP_002 AQKGRKQGGSQSSYVLQTEELVANKQQRETKNSHQNKGHYQNVVEVREEHSSKVQTSLCP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLNQDQEHGRKAHKISYPSSRTEERQLHH
       ::::.:::: ::::.::::::::::::::::::::::.:::::.:::: :: ::::.::.
NP_002 AHQDKLQHGSKDIFSTQDELLVYNKNQHQTKNLNQDQQHGRKANKISYQSSSTEERRLHY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC
       ::..::::::..::                                 :.           
NP_002 GENGVQKDVSQSSI---------------------------------YS-----------
              310                                                  

              370       380       390       400       410       420
pF1KB7 GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS
                                                                   
NP_002 ------------------------------------------------------------
                                                                   

              430       440       450       460       470       480
pF1KB7 GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY
                       ::::: .::::.:.:::::.:::..: ::.::::::::::::.:
NP_002 ----------------QTEEKAQGKSQKQITIPSQEQEHSQKANKISYQSSSTEERRLHY
                        320       330       340       350       360

              490       500       510       520       530       540
pF1KB7 GGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSH
       : ...:::::: ::  : :::: ::::::.:::.:. : :.::::.::::.. .::::::
NP_002 GENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGESGQSTNREQDLLSH
              370       380       390       400       410       420

              550       560       570       580  
pF1KB7 EQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST
       :::::... :  . .::: :.:  .: ::.:. :.::::. :
NP_002 EQKGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT
              430       440       450       460  




582 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:18:35 2016 done: Fri Nov  4 04:18:36 2016
 Total Scan time:  9.100 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]