FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7055, 582 aa
  1>>>pF1KB7055 582 - 582 aa - 582 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9520+/-0.00139; mu= 2.0279+/- 0.083
 mean_var=192.4974+/-40.872, 0's: 0 Z-trim(105.4): 38  B-trim: 0 in 0/50
 Lambda= 0.092440
 statistics sampled from 8380 (8394) to 8380 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.258), width:  16
 Scan time:  3.400

The best scores are:                                      opt bits E(32554)
CCDS13346.1 SEMG2 gene_id:6407|Hs108|chr20         ( 582) 3849 526.6 3.3e-149
CCDS13345.1 SEMG1 gene_id:6406|Hs108|chr20         ( 462) 2134 297.8 1.9e-80


>>CCDS13346.1 SEMG2 gene_id:6407|Hs108|chr20              (582 aa)
 initn: 3849 init1: 3849 opt: 3849  Z-score: 2792.2  bits: 526.6 E(32554): 3.3e-149
Smith-Waterman score: 3849; 99.7% identity (100.0% similar) in 582 aa overlap (1-582:1-582)

               10        20        30        40        50        60
pF1KB7 MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGKKGQHYFGQKDQQHTKSK
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS13 MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGQKGQHYFGQKDQQHTKSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLNQDQEHGRKAHKISYPSSRTEERQLHH
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS13 AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLSQDQEHGRKAHKISYPSSRTEERQLHH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 GGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSH
              490       500       510       520       530       540

              550       560       570       580  
pF1KB7 EQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST
       ::::::::::::::::::::::::::::::::::::::::::
CCDS13 EQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST
              550       560       570       580  

>>CCDS13345.1 SEMG1 gene_id:6406|Hs108|chr20              (462 aa)
 initn: 2968 init1: 2116 opt: 2134  Z-score: 1557.6  bits: 297.8 E(32554): 1.9e-80
Smith-Waterman score: 2155; 62.2% identity (73.0% similar) in 582 aa overlap (1-582:1-462)

               10        20        30        40        50        60
pF1KB7 MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGKKGQHYFGQKDQQHTKSK
       ::  :.::::::::::::::::::::::::.:::  ::::::.::::: ::: .:.:.::
CCDS13 MKPNIIFVLSLLLILEKQAAVMGQKGGSKGRLPSEFSQFPHGQKGQHYSGQKGKQQTESK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK
       ::::::.::::: :::: .:::::::::::::.:::..:::::::::. :::::::::::
CCDS13 GSFSIQYTYHVDANDHDQSRKSQQYDLNALHKTTKSQRHLGGSQQLLHNKQEGRDHDKSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG
       :::: .:::::::.::.:::::::::::::::::.::: ::::.:::::::::::.:.::
CCDS13 GHFHRVVIHHKGGKAHRGTQNPSQDQGNSPSGKGISSQYSNTEERLWVHGLSKEQTSVSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP
       ::::: ::::::::::::::::.:::::::::::::::::::::.::::::::.:::: :
CCDS13 AQKGRKQGGSQSSYVLQTEELVANKQQRETKNSHQNKGHYQNVVEVREEHSSKVQTSLCP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLNQDQEHGRKAHKISYPSSRTEERQLHH
       ::::.:::: ::::.::::::::::::::::::::::.:::::.:::: :: ::::.::.
CCDS13 AHQDKLQHGSKDIFSTQDELLVYNKNQHQTKNLNQDQQHGRKANKISYQSSSTEERRLHY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC
       ::..::::::..::                                 :.           
CCDS13 GENGVQKDVSQSSI---------------------------------YS-----------
              310                                                  

              370       380       390       400       410       420
pF1KB7 GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS
                                                                   
CCDS13 ------------------------------------------------------------
                                                                   

              430       440       450       460       470       480
pF1KB7 GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY
                       ::::: .::::.:.:::::.:::..: ::.::::::::::::.:
CCDS13 ----------------QTEEKAQGKSQKQITIPSQEQEHSQKANKISYQSSSTEERRLHY
                        320       330       340       350       360

              490       500       510       520       530       540
pF1KB7 GGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSH
       : ...:::::: ::  : :::: ::::::.:::.:. : :.::::.::::.. .::::::
CCDS13 GENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGESGQSTNREQDLLSH
              370       380       390       400       410       420

              550       560       570       580  
pF1KB7 EQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST
       :::::... :  . .::: :.:  .: ::.:. :.::::. :
CCDS13 EQKGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT
              430       440       450       460  




582 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:18:34 2016 done: Fri Nov  4 04:18:35 2016
 Total Scan time:  3.400 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]