FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7049, 492 aa
  1>>>pF1KB7049 492 - 492 aa - 492 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5134+/-0.00105; mu= 12.7137+/- 0.063
 mean_var=131.1819+/-28.460, 0's: 0 Z-trim(106.7): 43  B-trim: 0 in 0/51
 Lambda= 0.111979
 statistics sampled from 9153 (9164) to 9153 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.282), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS11141.1 KRBA2 gene_id:124751|Hs108|chr17       ( 492) 3280 541.9  6e-154
CCDS76951.1 KRBA2 gene_id:124751|Hs108|chr17       ( 410) 2716 450.7 1.4e-126
CCDS34355.1 ZBED9 gene_id:114821|Hs108|chr6        (1325) 1470 249.8 1.3e-65


>>CCDS11141.1 KRBA2 gene_id:124751|Hs108|chr17            (492 aa)
 initn: 3280 init1: 3280 opt: 3280  Z-score: 2877.3  bits: 541.9 E(32554): 6e-154
Smith-Waterman score: 3280; 100.0% identity (100.0% similar) in 492 aa overlap (1-492:1-492)

               10        20        30        40        50        60
pF1KB7 MPSFLVPSLVSSPVLLKLLFSPGPKTIWSLWQQPMLFQEATAFENMTKDWNYLEGSQKDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MPSFLVPSLVSSPVLLKLLFSPGPKTIWSLWQQPMLFQEATAFENMTKDWNYLEGSQKDC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 YRDTMLDSYENTVPQGSFLQLSMMPQRAGNDPPGVSNASEMEMEISNMREKFLMSVTKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YRDTMLDSYENTVPQGSFLQLSMMPQRAGNDPPGVSNASEMEMEISNMREKFLMSVTKLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ESKSYNSKVFSKEKYFQTIKEVKEAKEKGKKSSRDYRRAAKYDVISVQGTEKLIEATHGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ESKSYNSKVFSKEKYFQTIKEVKEAKEKGKKSSRDYRRAAKYDVISVQGTEKLIEATHGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RDRIRYYVHKEELFDILHDTHLSIGHGGRTRMLKELQGKYGNVTKEVIVLYLTLCKQCHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDRIRYYVHKEELFDILHDTHLSIGHGGRTRMLKELQGKYGNVTKEVIVLYLTLCKQCHQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KNPVPKRGLAPKPMTFKDIDSTCQVEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KNPVPKRGLAPKPMTFKDIDSTCQVEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QAHEVVSVLLDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QAHEVVSVLLDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGYKAKFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGYKAKFGL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 YSSNLPRETVATLQTEEELEIAEEQLENSLWIRQEERAEIGADRSDMDDDMDPTPEASEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YSSNLPRETVATLQTEEELEIAEEQLENSLWIRQEERAEIGADRSDMDDDMDPTPEASEP
              430       440       450       460       470       480

              490  
pF1KB7 STSQGTSGLLCW
       ::::::::::::
CCDS11 STSQGTSGLLCW
              490  

>>CCDS76951.1 KRBA2 gene_id:124751|Hs108|chr17            (410 aa)
 initn: 2716 init1: 2716 opt: 2716  Z-score: 2385.9  bits: 450.7 E(32554): 1.4e-126
Smith-Waterman score: 2716; 100.0% identity (100.0% similar) in 410 aa overlap (83-492:1-410)

             60        70        80        90       100       110  
pF1KB7 LEGSQKDCYRDTMLDSYENTVPQGSFLQLSMMPQRAGNDPPGVSNASEMEMEISNMREKF
                                     ::::::::::::::::::::::::::::::
CCDS76                               MMPQRAGNDPPGVSNASEMEMEISNMREKF
                                             10        20        30

            120       130       140       150       160       170  
pF1KB7 LMSVTKLVESKSYNSKVFSKEKYFQTIKEVKEAKEKGKKSSRDYRRAAKYDVISVQGTEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LMSVTKLVESKSYNSKVFSKEKYFQTIKEVKEAKEKGKKSSRDYRRAAKYDVISVQGTEK
               40        50        60        70        80        90

            180       190       200       210       220       230  
pF1KB7 LIEATHGERDRIRYYVHKEELFDILHDTHLSIGHGGRTRMLKELQGKYGNVTKEVIVLYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LIEATHGERDRIRYYVHKEELFDILHDTHLSIGHGGRTRMLKELQGKYGNVTKEVIVLYL
              100       110       120       130       140       150

            240       250       260       270       280       290  
pF1KB7 TLCKQCHQKNPVPKRGLAPKPMTFKDIDSTCQVEILDMQSSADGEFKFILYYQDHSTKFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TLCKQCHQKNPVPKRGLAPKPMTFKDIDSTCQVEILDMQSSADGEFKFILYYQDHSTKFI
              160       170       180       190       200       210

            300       310       320       330       340       350  
pF1KB7 ILRPLRTKQAHEVVSVLLDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ILRPLRTKQAHEVVSVLLDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDLKIVSGKY
              220       230       240       250       260       270

            360       370       380       390       400       410  
pF1KB7 HPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQMVRNQAFDVSLQQSPFEAMF
              280       290       300       310       320       330

            420       430       440       450       460       470  
pF1KB7 GYKAKFGLYSSNLPRETVATLQTEEELEIAEEQLENSLWIRQEERAEIGADRSDMDDDMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GYKAKFGLYSSNLPRETVATLQTEEELEIAEEQLENSLWIRQEERAEIGADRSDMDDDMD
              340       350       360       370       380       390

            480       490  
pF1KB7 PTPEASEPSTSQGTSGLLCW
       ::::::::::::::::::::
CCDS76 PTPEASEPSTSQGTSGLLCW
              400       410

>>CCDS34355.1 ZBED9 gene_id:114821|Hs108|chr6             (1325 aa)
 initn: 1428 init1: 734 opt: 1470  Z-score: 1291.4  bits: 249.8 E(32554): 1.3e-65
Smith-Waterman score: 1470; 53.7% identity (79.1% similar) in 430 aa overlap (55-481:166-592)

           30        40        50        60        70           80 
pF1KB7 KTIWSLWQQPMLFQEATAFENMTKDWNYLEGSQKDCYRDTMLDSYENTVP---QGSFLQL
                                     :.: . ..: :     .  :   .:::: .
CCDS34 EPRQQVSQGTYGQEVSMEEMIPLDSAKESLGTQLQSMEDRMECESPEPHPLQDNGSFLWF
         140       150       160       170       180       190     

              90       100       110       120       130       140 
pF1KB7 SMMPQRAGNDPPGVSNASEMEMEISNMREKFLMSVTKLVESKSYNSKVFSKEKYFQTIKE
       ::: :  :.:  .  ...: :.:  ::::::. :...:.:.:: :.:.::: :: : :::
CCDS34 SMMSQSMGGDNLSSLDTNEAEIEPENMREKFFRSLARLLENKSNNTKIFSKAKYCQLIKE
         200       210       220       230       240       250     

             150       160       170       180       190       200 
pF1KB7 VKEAKEKGKKSSRDYRRAAKYDVISVQGTEKLIEATHGERDRIRYYVHKEELFDILHDTH
       ::::: :.:: : :::: :..::: :::.::::::..:: :.::::.:.:.::::::.::
CCDS34 VKEAKAKAKKESVDYRRLARFDVILVQGNEKLIEAVNGETDKIRYYLHSEDLFDILHNTH
         260       270       280       290       300       310     

             210       220       230       240       250       260 
pF1KB7 LSIGHGGRTRMLKELQGKYGNVTKEVIVLYLTLCKQCHQKNPVPKRGLAPKPMTFKDIDS
       ::::::::::: ::::.:: :.:::::.::::::: :.:::   :. :. :  ..:...:
CCDS34 LSIGHGGRTRMEKELQAKYKNITKEVIMLYLTLCKPCQQKNSKLKKVLTSK--SIKEVSS
         320       330       340       350       360         370   

             270       280       290       300       310       320 
pF1KB7 TCQVEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDIFTILGTPSV
        :::...::: . :::..:::.:::  ::. .:: :..:.  ::. .:::::::.:.:::
CCDS34 RCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVAHALLDIFTIIGAPSV
           380       390       400       410       420       430   

             330       340       350       360       370       380 
pF1KB7 LDSDSGVEFTNQVVHELNELWPDLKIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHS
       :.::.: ::..::: ::...::.:::: :: .  :::.: :  ..:... : .:::.:.:
CCDS34 LQSDNGREFSSQVVSELSNIWPELKIVHGKSQTCQSQSSAE-QTEDIRKRIFSWMQTNNS
           440       450       460       470        480       490  

             390       400       410       420       430       440 
pF1KB7 CHWAKGLRFMQMVRNQAFDVSLQQSPFEAMFGYKAKFGLYSSNLPRETVATLQTEEELEI
        ::.. : :.:: .:: .  :.::.: :. :. .::.::  :.: .: ::.:.::.::. 
CCDS34 SHWTEFLWFIQMSQNQPYHRSMQQTPCESAFSSEAKLGLSHSQLTEELVASLHTENELDQ
            500       510       520       530       540       550  

             450       460       470       480       490           
pF1KB7 AEEQLENSLWIRQEERAEIGADRSDMDDDMDPTPEASEPSTSQGTSGLLCW         
       :...:::.:  . ::  : :.: ::...... ::...: :                    
CCDS34 ADKELENTLRAQYEENIETGTDSSDIEENLSVTPKVAEKSPPESRLRFLSCVVCEKECTG
            560       570       580       590       600       610  

CCDS34 VNSCISCDGNIHAICGVPSQHGTEGCGRQITCSLCYETSTMKRKHDEIQRSLPVKPSKML
            620       630       640       650       660       670  




492 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:14:17 2016 done: Fri Nov  4 04:14:18 2016
 Total Scan time:  3.260 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]