Result of FASTA (omim) for
pF1KB7043
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7043, 470 aa
1>>>pF1KB7043 470 - 470 aa - 470 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0747+/-0.000335; mu= 21.1336+/- 0.021
mean_var=99.9199+/-20.173, 0's: 0 Z-trim(117.7): 129 B-trim: 0 in 0/55
Lambda= 0.128306
statistics sampled from 29781 (29921) to 29781 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.351), width: 16
Scan time: 9.960
The best scores are: opt bits E(85289)
NP_000466 (OMIM: 300018,300200,300473) nuclear rec ( 470) 3306 622.4 8.4e-178
XP_016884827 (OMIM: 300018,300200,300473) PREDICTE ( 400) 2758 520.8 2.6e-147
NP_068804 (OMIM: 601665,604630) nuclear receptor s ( 257) 293 64.3 4.4e-10
XP_011540599 (OMIM: 601665,604630) PREDICTED: nucl ( 207) 247 55.7 1.4e-07
NP_055064 (OMIM: 268100,604485,611131) photorecept ( 410) 225 52.0 3.7e-06
NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 222 51.4 5.4e-06
NP_001278623 (OMIM: 601426) nuclear receptor subfa ( 596) 212 49.8 2.5e-05
XP_016862609 (OMIM: 601426) PREDICTED: nuclear rec ( 596) 212 49.8 2.5e-05
XP_011532368 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 212 49.8 2.5e-05
XP_011532366 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 212 49.8 2.5e-05
NP_003289 (OMIM: 601426) nuclear receptor subfamil ( 615) 212 49.8 2.5e-05
XP_011532367 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 212 49.8 2.5e-05
XP_011532365 (OMIM: 601426) PREDICTED: nuclear rec ( 629) 212 49.8 2.6e-05
XP_016862607 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 212 49.8 2.6e-05
XP_011532361 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 212 49.8 2.6e-05
XP_016862608 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 212 49.8 2.6e-05
XP_011532360 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 212 49.8 2.6e-05
XP_011532363 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 212 49.8 2.6e-05
NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 202 47.5 5.3e-05
NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 202 47.5 5.3e-05
NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 202 47.5 5.5e-05
NP_066285 (OMIM: 107773,615779) COUP transcription ( 414) 202 47.7 7.1e-05
XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 199 47.0 7.9e-05
NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 199 47.2 0.00011
XP_006719648 (OMIM: 601529) PREDICTED: nuclear rec ( 426) 186 44.8 0.00056
XP_005269190 (OMIM: 601529) PREDICTED: nuclear rec ( 598) 187 45.1 0.00062
XP_011537019 (OMIM: 601529) PREDICTED: nuclear rec ( 507) 186 44.9 0.00063
NP_003288 (OMIM: 601529) nuclear receptor subfamil ( 603) 186 45.0 0.00071
NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 166 41.0 0.0063
NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 166 41.0 0.0063
NP_008848 (OMIM: 180247) retinoic acid receptor RX ( 463) 166 41.1 0.0077
>>NP_000466 (OMIM: 300018,300200,300473) nuclear recepto (470 aa)
initn: 3306 init1: 3306 opt: 3306 Z-score: 3313.1 bits: 622.4 E(85289): 8.4e-178
Smith-Waterman score: 3306; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)
10 20 30 40 50 60
pF1KB7 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ
370 380 390 400 410 420
430 440 450 460 470
pF1KB7 GPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI
430 440 450 460 470
>>XP_016884827 (OMIM: 300018,300200,300473) PREDICTED: n (400 aa)
initn: 2758 init1: 2758 opt: 2758 Z-score: 2765.7 bits: 520.8 E(85289): 2.6e-147
Smith-Waterman score: 2758; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)
10 20 30 40 50 60
pF1KB7 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ
:::::::::::::::::::::::::::::
XP_016 IKCFLSKCWSLNISTKEYAYLKGTVLFNPGKGKENDCNHH
370 380 390 400
>>NP_068804 (OMIM: 601665,604630) nuclear receptor subfa (257 aa)
initn: 547 init1: 293 opt: 293 Z-score: 302.0 bits: 64.3 E(85289): 4.4e-10
Smith-Waterman score: 502; 36.7% identity (61.0% similar) in 267 aa overlap (200-466:9-254)
170 180 190 200 210 220
pF1KB7 AWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEE
: : . .. . :: . .:. .:.:
NP_068 MSTSQPGACPC-QGAASRPAILYALLSSS--LKAVP--
10 20 30
230 240 250 260 270 280
pF1KB7 RPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRN
:::. ::: : .:. .:. : : ::. :.. :: : :: ..: :...
NP_068 RPRS---RCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQG
40 50 60 70 80 90
290 300 310 320 330 340
pF1KB7 CWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEA
::. :..: :::: . ::..:. ::.:.::: . .::. ::
NP_068 CWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLP-------------D
100 110 120 130
350 360 370 380 390 400
pF1KB7 RKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQ
: :: . :: ..: : . :::..: :::: ::::.:::::::::: ...: :: ..
NP_068 RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHW
140 150 160 170 180 190
410 420 430 440 450 460
pF1KB7 ILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTK
.: : . . . :. .. : :. : ......:::::::: :.. .. .::
NP_068 VLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
200 210 220 230 240 250
470
pF1KB7 I
>>XP_011540599 (OMIM: 601665,604630) PREDICTED: nuclear (207 aa)
initn: 415 init1: 240 opt: 247 Z-score: 257.1 bits: 55.7 E(85289): 1.4e-07
Smith-Waterman score: 370; 38.2% identity (59.7% similar) in 191 aa overlap (200-390:9-178)
170 180 190 200 210 220
pF1KB7 AWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEE
: : . .. . :: . .:. .:.:
XP_011 MSTSQPGACPC-QGAASRPAILYALLSSS--LKAVP--
10 20 30
230 240 250 260 270 280
pF1KB7 RPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRN
:::. ::: : .:. .:. : : ::. :.. :: : :: ..: :...
XP_011 RPRS---RCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQG
40 50 60 70 80 90
290 300 310 320 330 340
pF1KB7 CWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEA
::. :..: :::: . ::..:. ::.:.::: . .::. ::
XP_011 CWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLP-------------D
100 110 120 130
350 360 370 380 390 400
pF1KB7 RKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQ
: :: . :: ..: : . :::..: :::: ::::.:::::
XP_011 RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDKETEAQRLSDLPKVTQLIS
140 150 160 170 180 190
410 420 430 440 450 460
pF1KB7 ILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTK
XP_011 DSAGIHTQEA
200
>>NP_055064 (OMIM: 268100,604485,611131) photoreceptor-s (410 aa)
initn: 241 init1: 178 opt: 225 Z-score: 231.6 bits: 52.0 E(85289): 3.7e-06
Smith-Waterman score: 295; 25.0% identity (56.3% similar) in 332 aa overlap (137-466:121-408)
110 120 130 140 150 160
pF1KB7 CSCGSDPGVGRAGLPGGRPVALLYRCCFCGEDHPRQGSILY--SLLTSSKQTHVAPAAPE
: .::. . .. :. ..... . .::
NP_055 PVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPP
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB7 ARPGGAWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQ
: :.: :: . : . : . : : :.. .:.... . ...:.
NP_055 A-PAG----RSPRGPTPMSAARALGHHFMASLITAETCAKLEPEDADE--NIDVTSND--
160 170 180 190 200
230 240 250 260 270 280
pF1KB7 AAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQL
:: : .:. ..: : .: : . :... :. .....: :: :. ::. .:.
NP_055 --PEF-PSSPYSSSS-----PCGLDS---IHETSARLLFMAVKWAKNLPVFSSLPFRDQV
210 220 230 240 250
290 300 310 320 330 340
pF1KB7 VLVRNCWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLA
.:... :. :..: : : ... :: .: . :
NP_055 ILLEEAWSELFLLGAIQWSLPLDSC-----------------------PLLAPP-EASAA
260 270 280
350 360 370 380 390 400
pF1KB7 PPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQ
:..: . .. ...... .:. .: .. :.: .:. :::.:.. ::. .....::
NP_055 GGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ
290 300 310 320 330 340
410 420 430 440 450 460
pF1KB7 WGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLE
.: .::.:.. : . :: .: : ::::.:. : :::: ::.. :. .. .
NP_055 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCD
350 360 370 380 390 400
470
pF1KB7 MLCTKI
:.
NP_055 MFKN
410
>>NP_005225 (OMIM: 132880) nuclear receptor subfamily 2 (404 aa)
initn: 368 init1: 222 opt: 222 Z-score: 228.6 bits: 51.4 E(85289): 5.4e-06
Smith-Waterman score: 287; 27.3% identity (53.5% similar) in 286 aa overlap (181-466:136-390)
160 170 180 190 200 210
pF1KB7 TSSKQTHVAPAAPEARPGGAWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQG
::. : :. . : :. : :
NP_005 NQCQYCRLKKCFRVGMRKEAVQRGRIPHSLPGAVAASSGSPPGSALAAVASGGDLFPGQ-
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB7 STLYCVPTSTNQAQAAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVK
:.: :: : : ..:. :. . . ::: :. :..:.....
NP_005 ------PVSELIAQLLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWAR
170 180 190 200 210
280 290 300 310 320 330
pF1KB7 YLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGG
. : : ::. .:..:.: :. :..:. :: : ..:. . . :
NP_005 HAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGL-------------
220 230 240 250 260
340 350 360 370 380 390
pF1KB7 NEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPD
: :: : : : .::.:.. ..: :.... ::. ::. .::.::
NP_005 -----------HAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPD
270 280 290 300 310
400 410 420 430 440 450
pF1KB7 VPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFR
. ::. ....:: .: :.:..: . . .:: .: : :: . :..:..:::
NP_005 ACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFM
320 330 340 350 360 370
460 470
pF1KB7 PIIGTVSMDDMMLEMLCTKI
..: . .. .. .::
NP_005 RLVGKTPIETLIRDMLLSGSTFNWPYGSGQ
380 390 400
>>NP_001278623 (OMIM: 601426) nuclear receptor subfamily (596 aa)
initn: 340 init1: 197 opt: 212 Z-score: 216.7 bits: 49.8 E(85289): 2.5e-05
Smith-Waterman score: 295; 28.8% identity (61.9% similar) in 215 aa overlap (254-466:386-580)
230 240 250 260 270 280
pF1KB7 QAAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQ
.::.:: :. ...... .: ::.: : .
NP_001 EVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCN
360 370 380 390 400 410
290 300 310 320 330 340
pF1KB7 LVLVRNCWASLLMLELAQ--DRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQH
::: :: :. : ::: . ... :. .. . ::. . .. . .:.. . ...
NP_001 TSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQN--SIQEDKLSGDR---IKQVME
420 430 440 450 460 470
350 360 370 380 390 400
pF1KB7 HLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQ
: . .. : .. .:.:. ::::::. :::.:: ::: .. :.
NP_001 H---------------IWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIE
480 490 500 510
410 420 430 440 450 460
pF1KB7 GLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDM
.: .:. :..... :.. :. .. : ::....:. :::: .::.::.:..
NP_001 KFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSI
520 530 540 550 560 570
470
pF1KB7 MLEMLCTKI
. .:
NP_001 IPYILKMETAEYNGQITGASL
580 590
>>XP_016862609 (OMIM: 601426) PREDICTED: nuclear recepto (596 aa)
initn: 340 init1: 197 opt: 212 Z-score: 216.7 bits: 49.8 E(85289): 2.5e-05
Smith-Waterman score: 295; 28.8% identity (61.9% similar) in 215 aa overlap (254-466:386-580)
230 240 250 260 270 280
pF1KB7 QAAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQ
.::.:: :. ...... .: ::.: : .
XP_016 EVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCN
360 370 380 390 400 410
290 300 310 320 330 340
pF1KB7 LVLVRNCWASLLMLELAQ--DRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQH
::: :: :. : ::: . ... :. .. . ::. . .. . .:.. . ...
XP_016 TSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQN--SIQEDKLSGDR---IKQVME
420 430 440 450 460 470
350 360 370 380 390 400
pF1KB7 HLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQ
: . .. : .. .:.:. ::::::. :::.:: ::: .. :.
XP_016 H---------------IWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIE
480 490 500 510
410 420 430 440 450 460
pF1KB7 GLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDM
.: .:. :..... :.. :. .. : ::....:. :::: .::.::.:..
XP_016 KFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSI
520 530 540 550 560 570
470
pF1KB7 MLEMLCTKI
. .:
XP_016 IPYILKMETAEYNGQITGASL
580 590
>>XP_011532368 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 340 init1: 197 opt: 212 Z-score: 216.5 bits: 49.8 E(85289): 2.5e-05
Smith-Waterman score: 295; 28.8% identity (61.9% similar) in 215 aa overlap (254-466:405-599)
230 240 250 260 270 280
pF1KB7 QAAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQ
.::.:: :. ...... .: ::.: : .
XP_011 EVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCN
380 390 400 410 420 430
290 300 310 320 330 340
pF1KB7 LVLVRNCWASLLMLELAQ--DRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQH
::: :: :. : ::: . ... :. .. . ::. . .. . .:.. . ...
XP_011 TSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQN--SIQEDKLSGDR---IKQVME
440 450 460 470 480
350 360 370 380 390 400
pF1KB7 HLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQ
: . .. : .. .:.:. ::::::. :::.:: ::: .. :.
XP_011 H---------------IWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIE
490 500 510 520 530
410 420 430 440 450 460
pF1KB7 GLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDM
.: .:. :..... :.. :. .. : ::....:. :::: .::.::.:..
XP_011 KFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSI
540 550 560 570 580 590
470
pF1KB7 MLEMLCTKI
. .:
XP_011 IPYILKMETAEYNGQITGASL
600 610
>>XP_011532366 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 340 init1: 197 opt: 212 Z-score: 216.5 bits: 49.8 E(85289): 2.5e-05
Smith-Waterman score: 295; 28.8% identity (61.9% similar) in 215 aa overlap (254-466:405-599)
230 240 250 260 270 280
pF1KB7 QAAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQ
.::.:: :. ...... .: ::.: : .
XP_011 EVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCN
380 390 400 410 420 430
290 300 310 320 330 340
pF1KB7 LVLVRNCWASLLMLELAQ--DRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQH
::: :: :. : ::: . ... :. .. . ::. . .. . .:.. . ...
XP_011 TSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQN--SIQEDKLSGDR---IKQVME
440 450 460 470 480
350 360 370 380 390 400
pF1KB7 HLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQ
: . .. : .. .:.:. ::::::. :::.:: ::: .. :.
XP_011 H---------------IWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIE
490 500 510 520 530
410 420 430 440 450 460
pF1KB7 GLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDM
.: .:. :..... :.. :. .. : ::....:. :::: .::.::.:..
XP_011 KFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSI
540 550 560 570 580 590
470
pF1KB7 MLEMLCTKI
. .:
XP_011 IPYILKMETAEYNGQITGASL
600 610
470 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:11:40 2016 done: Fri Nov 4 04:11:42 2016
Total Scan time: 9.960 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]