FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7043, 470 aa
  1>>>pF1KB7043 470 - 470 aa - 470 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1900+/-0.000747; mu= 20.2737+/- 0.045
 mean_var=91.4347+/-18.507, 0's: 0 Z-trim(111.0): 41  B-trim: 717 in 1/53
 Lambda= 0.134128
 statistics sampled from 12003 (12044) to 12003 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.37), width:  16
 Scan time:  3.450

The best scores are:                                      opt bits E(32554)
CCDS14223.1 NR0B1 gene_id:190|Hs108|chrX           ( 470) 3306 649.6  2e-186
CCDS291.1 NR0B2 gene_id:8431|Hs108|chr1            ( 257)  293 66.4 4.2e-11


>>CCDS14223.1 NR0B1 gene_id:190|Hs108|chrX                (470 aa)
 initn: 3306 init1: 3306 opt: 3306  Z-score: 3460.5  bits: 649.6 E(32554): 2e-186
Smith-Waterman score: 3306; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)

               10        20        30        40        50        60
pF1KB7 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ
              370       380       390       400       410       420

              430       440       450       460       470
pF1KB7 GPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI
              430       440       450       460       470

>>CCDS291.1 NR0B2 gene_id:8431|Hs108|chr1                 (257 aa)
 initn: 547 init1: 293 opt: 293  Z-score: 312.8  bits: 66.4 E(32554): 4.2e-11
Smith-Waterman score: 502; 36.7% identity (61.0% similar) in 267 aa overlap (200-466:9-254)

     170       180       190       200       210       220         
pF1KB7 AWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEE
                                     : : .   .. . :: . .:.   .:.:  
CCDS29                       MSTSQPGACPC-QGAASRPAILYALLSSS--LKAVP--
                                     10         20          30     

     230       240       250       260       270       280         
pF1KB7 RPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRN
       :::.          ::: : .:. .:. :   : ::. :.. :: :  :: ..:  :...
CCDS29 RPRS---RCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQG
               40        50        60        70        80        90

     290       300       310       320       330       340         
pF1KB7 CWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEA
       ::. :..: :::: . ::..:.  ::.:.:::  .   .::.  ::              
CCDS29 CWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLP-------------D
              100       110       120       130                    

     350       360       370       380       390       400         
pF1KB7 RKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQ
       :  :: . :: ..: : . :::..: :::: ::::.:::::::::: ...:  ::  .. 
CCDS29 RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHW
       140       150       160       170       180       190       

     410       420       430       440       450       460         
pF1KB7 ILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTK
       .: :  .    . . :. ..  :   :. : ......:::::::: :..  .. .::   
CCDS29 VLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR
       200       210       220       230       240       250       

     470
pF1KB7 I




470 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:11:40 2016 done: Fri Nov  4 04:11:40 2016
 Total Scan time:  3.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]