FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7039, 458 aa
  1>>>pF1KB7039 458 - 458 aa - 458 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7443+/- 0.001; mu= 15.2464+/- 0.060
 mean_var=69.0740+/-13.685, 0's: 0 Z-trim(104.0): 30  B-trim: 0 in 0/50
 Lambda= 0.154318
 statistics sampled from 7656 (7666) to 7656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.235), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS9116.1 FICD gene_id:11153|Hs108|chr12          ( 458) 2964 669.3 2.3e-192


>>CCDS9116.1 FICD gene_id:11153|Hs108|chr12               (458 aa)
 initn: 2964 init1: 2964 opt: 2964  Z-score: 3566.9  bits: 669.3 E(32554): 2.3e-192
Smith-Waterman score: 2964; 100.0% identity (100.0% similar) in 458 aa overlap (1-458:1-458)

               10        20        30        40        50        60
pF1KB7 MMLIPMASVMAVTEPKWVSVWSRFLWVTLLSMVLGSLLALLLPLGAVEEQCLAVLKGLYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MMLIPMASVMAVTEPKWVSVWSRFLWVTLLSMVLGSLLALLLPLGAVEEQCLAVLKGLYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LRSKPDRAQHAATKCTSPSTELSITSRGATLLVAKTKASPAGKLEARAALNQALEMKRQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEETYYHHIYHTVAIEGNTLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEETYYHHIYHTVAIEGNTLTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SEIRHILETRYAVPGKSLEEQNEVIGMHAAMKYINTTLVSRIGSVTISDVLEIHRRVLGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SEIRHILETRYAVPGKSLEEQNEVIGMHAAMKYINTTLVSRIGSVTISDVLEIHRRVLGY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VDPVEAGRFRTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VDPVEAGRFRTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAANEGDVRPFIRFIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 YIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAANEGDVRPFIRFIAK
              370       380       390       400       410       420

              430       440       450        
pF1KB7 CTETTLDTLLFATTEYSVALPEAQPNHSGFKETLPVKP
       ::::::::::::::::::::::::::::::::::::::
CCDS91 CTETTLDTLLFATTEYSVALPEAQPNHSGFKETLPVKP
              430       440       450        




458 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:11:03 2016 done: Fri Nov  4 04:11:04 2016
 Total Scan time:  2.810 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]