Result of FASTA (ccds) for
pF1KB7033
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7033, 424 aa
1>>>pF1KB7033 424 - 424 aa - 424 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0808+/-0.00078; mu= 13.8669+/- 0.047
mean_var=81.1640+/-16.524, 0's: 0 Z-trim(109.2): 9 B-trim: 192 in 1/49
Lambda= 0.142361
statistics sampled from 10692 (10698) to 10692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.329), width: 16
Scan time: 3.300
The best scores are: opt bits E(32554)
CCDS294.2 FAM46B gene_id:115572|Hs108|chr1 ( 425) 2811 586.8 1.3e-167
CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6 ( 442) 1654 349.2 4.6e-96
CCDS896.1 FAM46C gene_id:54855|Hs108|chr1 ( 391) 1586 335.2 6.6e-92
CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX ( 389) 1281 272.6 4.8e-73
>>CCDS294.2 FAM46B gene_id:115572|Hs108|chr1 (425 aa)
initn: 2811 init1: 2811 opt: 2811 Z-score: 3122.6 bits: 586.8 E(32554): 1.3e-167
Smith-Waterman score: 2811; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:2-425)
10 20 30 40 50
pF1KB7 MPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MMPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 LGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 CTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 CTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 FHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 FHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB7 LQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNH
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB7 ERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT
370 380 390 400 410 420
420
pF1KB7 WLPCN
:::::
CCDS29 WLPCN
>>CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6 (442 aa)
initn: 1599 init1: 1219 opt: 1654 Z-score: 1838.1 bits: 349.2 E(32554): 4.6e-96
Smith-Waterman score: 1654; 65.3% identity (83.2% similar) in 386 aa overlap (44-424:59-442)
20 30 40 50 60 70
pF1KB7 AAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRG
: : . :.: ::.:::..::: :::::::
CCDS34 GGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRG
30 40 50 60 70 80
80 90 100 110 120 130
pF1KB7 NFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDL
::::: .:: ::.::: : :. . :..:::.::::::::: .::::::::::.: .::
CCDS34 NFPTLELQPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADL
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB7 RSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSN
:.:. :: .: ::: ::::::: ::.. ::::::::::::::.::::.::::::::::::
CCDS34 RGEGEFQTVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSN
150 160 170 180 190 200
200 210 220 230 240 250
pF1KB7 KSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDF
.::::::::::::.:::::::.::::: ::::::: .:: .::.:.::::. :::.::::
CCDS34 NSGKNVELKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDF
210 220 230 240 250 260
260 270 280 290 300 310
pF1KB7 TEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFP
::..:: ...::::.:::::::::::::.:::::::: : ....:::::::::::::
CCDS34 QEAFDHLCNKIIATRNPEEIRGGGLLKYCNLLVRGFRP-ASDEIKTLQRYMCSRFFIDFS
270 280 290 300 310 320
320 330 340 350 360 370
pF1KB7 DLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALAL
:. ::.: :: ::. :: : . :.: :.::: ::::::::::.:::::::.::. ::.
CCDS34 DIGEQQRKLESYLQNHFVGLED-RKYEYLMTLHGVVNESTVCLMGHERRQTLNLITMLAI
330 340 350 360 370 380
380 390 400 410 420
pF1KB7 QALAEQG--PAATAALAWRPPGTDGVVPATVNYYVTPVQPLLA---HAYPTWLPCN
..::.:. : .. . . :. . :::.. :::... ..: ::::::
CCDS34 RVLADQNVIPNVANVTCYYQPAPYVADANFSNYYIAQVQPVFTCQQQTYSTWLPCN
390 400 410 420 430 440
>>CCDS896.1 FAM46C gene_id:54855|Hs108|chr1 (391 aa)
initn: 1494 init1: 1331 opt: 1586 Z-score: 1763.4 bits: 335.2 E(32554): 6.6e-92
Smith-Waterman score: 1586; 64.0% identity (83.0% similar) in 383 aa overlap (48-424:14-391)
20 30 40 50 60 70
pF1KB7 GTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPT
.: :.: ::.:: .:.: .::::::::::
CCDS89 MAEESSCTRDCMSFSVLNWDQVSRLHEVLTEVVPIHGRGNFPT
10 20 30 40
80 90 100 110 120 130
pF1KB7 LSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEA
: . ..:::.::: ::: :..::.:::.::::.::: ..::: :::::.:.: : .::
CCDS89 LEITLKDIVQTVRSRLEEAGIKVHDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEA
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB7 SFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGK
:::.. ::: ::.::: ::.. ::.:.::::::::::::::::.:::::::::::.::
CCDS89 EFQLVRDVVLCSLLNFLPEGVNKLKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGK
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB7 NVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEAL
:::::::::.:::::::.:::::::::::.: .::..:.:: ::::: :::.:::: ::.
CCDS89 NVELKFVDSIRRQFEFSVDSFQIILDSLLFFYDCSNNPISEHFHPTVIGESMYGDFEEAF
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB7 EHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVE
.::..:.:::..:::::::::::: .:::: ::: . ....:.:::::::::::::..:
CCDS89 DHLQNRLIATKNPEEIRGGGLLKYSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILE
230 240 250 260 270 280
320 330 340 350 360 370
pF1KB7 QRRTLERYLEAHFGGADAAR-RYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQAL
:.: :: ::. :: :. : .: :. :.:::::::::::.:::::::.::. :::..:
CCDS89 QQRKLETYLQNHF--AEEERSKYDYLMILRRVVNESTVCLMGHERRQTLNLISLLALRVL
290 300 310 320 330 340
380 390 400 410 420
pF1KB7 AEQG--PAATAALAWRPPG---TDGVVPATVNYYVTPVQPLLAHAYPTWLPCN
:::. :.:: . . :. .:: ::::. .. ::::::::
CCDS89 AEQNIIPSATNVTCYYQPAPYVSDG---NFSNYYVAHPPVTYSQPYPTWLPCN
350 360 370 380 390
>>CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX (389 aa)
initn: 1226 init1: 1092 opt: 1281 Z-score: 1424.9 bits: 272.6 E(32554): 4.8e-73
Smith-Waterman score: 1281; 52.5% identity (79.0% similar) in 366 aa overlap (48-411:6-370)
20 30 40 50 60 70
pF1KB7 GTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPT
...:.: :: :: .:.: :::::.:::::
CCDS14 MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPT
10 20 30
80 90 100 110 120 130
pF1KB7 LSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEA
. :.:..:..::.. : ::. :...::.::.::..: ..:..:::::..: :.: ..
CCDS14 MEVKPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB7 SFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGK
::..: .:: ::::::: :.. :..: .:.::::::::::. : ::::::::..::
CCDS14 EFQVVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGK
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB7 NVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEAL
:.:::::.:.:::::::.:::::.:: .: : . ... ... .:.:..::.:::: ::.
CCDS14 NLELKFVSSLRRQFEFSVDSFQIVLDPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAM
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB7 EHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVE
::.:..: ::.::::::::::::: :::.::.: .... :.:::::::::::: . :
CCDS14 THLQHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEE
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB7 QRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQALA
:.. .: ::. :: : .. .: :.::: ::::::::::..:::: : ::. .::..:.
CCDS14 QQKKIESYLHNHFIG-EGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLG
280 290 300 310 320 330
380 390 400 410 420
pF1KB7 EQG--PAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPTWLPCN
: . : . . . :. .. : :: : :
CCDS14 ELNILPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
340 350 360 370 380
424 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:08:22 2016 done: Fri Nov 4 04:08:23 2016
Total Scan time: 3.300 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]