Result of FASTA (omim) for
pF1KB7008
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7008, 465 aa
1>>>pF1KB7008 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3983+/-0.000487; mu= -0.8677+/- 0.031
mean_var=502.1883+/-105.986, 0's: 0 Z-trim(122.1): 252 B-trim: 1820 in 1/60
Lambda= 0.057232
statistics sampled from 39423 (39712) to 39423 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.466), width: 16
Scan time: 11.010
The best scores are: opt bits E(85289)
NP_009116 (OMIM: 612678) CUGBP Elav-like family me ( 465) 3126 272.6 1.6e-72
NP_001278035 (OMIM: 612678) CUGBP Elav-like family ( 464) 3109 271.2 4.3e-72
NP_001278036 (OMIM: 612678) CUGBP Elav-like family ( 464) 3108 271.1 4.6e-72
NP_001166119 (OMIM: 612678) CUGBP Elav-like family ( 418) 2806 246.1 1.4e-64
XP_011507414 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 389) 2616 230.4 7e-60
XP_016855634 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 389) 2616 230.4 7e-60
XP_006711202 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 389) 2616 230.4 7e-60
XP_016855635 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 388) 2598 228.9 2e-59
XP_011507416 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 388) 2598 228.9 2e-59
XP_006711204 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 388) 2598 228.9 2e-59
XP_016881341 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1803 163.3 1.3e-39
XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 494) 1803 163.4 1.3e-39
XP_016881354 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1798 162.9 1.6e-39
XP_016881335 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 476) 1789 162.2 2.8e-39
XP_016881329 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 496) 1789 162.2 2.9e-39
XP_016881351 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1786 161.9 3.2e-39
XP_016881339 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1786 161.9 3.4e-39
XP_016881338 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 473) 1785 161.9 3.6e-39
NP_001020260 (OMIM: 612679) CUGBP Elav-like family ( 448) 1784 161.7 3.6e-39
XP_016881350 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1781 161.5 4.3e-39
XP_016881340 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1773 160.9 7.1e-39
XP_016881336 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1771 160.7 7.9e-39
XP_011524388 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 495) 1771 160.7 8.1e-39
XP_016881353 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1768 160.4 9.1e-39
XP_016881346 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 454) 1768 160.4 9.2e-39
XP_016881337 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1768 160.4 9.4e-39
XP_016881349 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1766 160.2 1e-38
XP_016881352 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1763 160.0 1.2e-38
XP_011507413 (OMIM: 612678) PREDICTED: CUGBP Elav- ( 414) 1728 157.1 8.6e-38
NP_001166120 (OMIM: 612678) CUGBP Elav-like family ( 415) 1725 156.8 1e-37
NP_443072 (OMIM: 612681) CUGBP Elav-like family me ( 481) 1589 145.7 2.7e-34
XP_006722896 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 484) 1553 142.7 2.1e-33
NP_068757 (OMIM: 612680) CUGBP Elav-like family me ( 485) 1544 142.0 3.5e-33
XP_006722895 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 485) 1544 142.0 3.5e-33
NP_001166155 (OMIM: 612681) CUGBP Elav-like family ( 454) 1499 138.2 4.5e-32
XP_016881357 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 353) 1349 125.7 2.1e-28
XP_016881359 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1346 125.4 2.4e-28
XP_016881360 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 325) 1344 125.2 2.6e-28
NP_001166144 (OMIM: 612680) CUGBP Elav-like family ( 409) 1344 125.4 3e-28
XP_016881358 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1331 124.2 5.7e-28
XP_016881361 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 324) 1326 123.7 7.3e-28
XP_016872624 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 482) 1291 121.1 6.8e-27
NP_006551 (OMIM: 601074) CUGBP Elav-like family me ( 482) 1291 121.1 6.8e-27
XP_016872602 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016872600 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016872601 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016872603 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 1291 121.1 7.1e-27
XP_016881333 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 484) 1252 117.9 6.4e-26
XP_011524387 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 1252 117.9 6.5e-26
XP_016881345 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 1247 117.4 8.2e-26
>>NP_009116 (OMIM: 612678) CUGBP Elav-like family member (465 aa)
initn: 3126 init1: 3126 opt: 3126 Z-score: 1422.8 bits: 272.6 E(85289): 1.6e-72
Smith-Waterman score: 3126; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)
10 20 30 40 50 60
pF1KB7 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
370 380 390 400 410 420
430 440 450 460
pF1KB7 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::
NP_009 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
430 440 450 460
>>NP_001278035 (OMIM: 612678) CUGBP Elav-like family mem (464 aa)
initn: 2525 init1: 2318 opt: 3109 Z-score: 1415.2 bits: 271.2 E(85289): 4.3e-72
Smith-Waterman score: 3109; 99.8% identity (99.8% similar) in 465 aa overlap (1-465:1-464)
10 20 30 40 50 60
pF1KB7 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
:::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
NP_001 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQ
310 320 330 340 350
370 380 390 400 410 420
pF1KB7 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
360 370 380 390 400 410
430 440 450 460
pF1KB7 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
420 430 440 450 460
>>NP_001278036 (OMIM: 612678) CUGBP Elav-like family mem (464 aa)
initn: 2502 init1: 2502 opt: 3108 Z-score: 1414.8 bits: 271.1 E(85289): 4.6e-72
Smith-Waterman score: 3108; 99.8% identity (99.8% similar) in 465 aa overlap (1-465:1-464)
10 20 30 40 50 60
pF1KB7 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 ALKAQSALHEQKTLPGMNRPIQVKPADSESRG-DRKLFVGMLGKQQTDEDVRKMFEPFGT
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQ
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB7 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQS
360 370 380 390 400 410
430 440 450 460
pF1KB7 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
420 430 440 450 460
>>NP_001166119 (OMIM: 612678) CUGBP Elav-like family mem (418 aa)
initn: 2806 init1: 2806 opt: 2806 Z-score: 1280.5 bits: 246.1 E(85289): 1.4e-64
Smith-Waterman score: 2806; 100.0% identity (100.0% similar) in 417 aa overlap (49-465:2-418)
20 30 40 50 60 70
pF1KB7 EEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMN
::::::::::::::::::::::::::::::
NP_001 MGCAFLTYCARDSALKAQSALHEQKTLPGMN
10 20 30
80 90 100 110 120 130
pF1KB7 RPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCA
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB7 FVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIA
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB7 LQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSG
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB7 TSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPL
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB7 QQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPD
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB7 GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI
340 350 360 370 380 390
440 450 460
pF1KB7 QAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::
NP_001 QAMNGFQIGMKRLKVQLKRPKDANRPY
400 410
>>XP_011507414 (OMIM: 612678) PREDICTED: CUGBP Elav-like (389 aa)
initn: 2616 init1: 2616 opt: 2616 Z-score: 1196.0 bits: 230.4 E(85289): 7e-60
Smith-Waterman score: 2616; 100.0% identity (100.0% similar) in 389 aa overlap (77-465:1-389)
50 60 70 80 90 100
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
::::::::::::::::::::::::::::::
XP_011 MNRPIQVKPADSESRGEDRKLFVGMLGKQQ
10 20 30
110 120 130 140 150 160
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
340 350 360 370 380
>>XP_016855634 (OMIM: 612678) PREDICTED: CUGBP Elav-like (389 aa)
initn: 2616 init1: 2616 opt: 2616 Z-score: 1196.0 bits: 230.4 E(85289): 7e-60
Smith-Waterman score: 2616; 100.0% identity (100.0% similar) in 389 aa overlap (77-465:1-389)
50 60 70 80 90 100
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
::::::::::::::::::::::::::::::
XP_016 MNRPIQVKPADSESRGEDRKLFVGMLGKQQ
10 20 30
110 120 130 140 150 160
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
340 350 360 370 380
>>XP_006711202 (OMIM: 612678) PREDICTED: CUGBP Elav-like (389 aa)
initn: 2616 init1: 2616 opt: 2616 Z-score: 1196.0 bits: 230.4 E(85289): 7e-60
Smith-Waterman score: 2616; 100.0% identity (100.0% similar) in 389 aa overlap (77-465:1-389)
50 60 70 80 90 100
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
::::::::::::::::::::::::::::::
XP_006 MNRPIQVKPADSESRGEDRKLFVGMLGKQQ
10 20 30
110 120 130 140 150 160
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
340 350 360 370 380
>>XP_016855635 (OMIM: 612678) PREDICTED: CUGBP Elav-like (388 aa)
initn: 2502 init1: 2502 opt: 2598 Z-score: 1188.0 bits: 228.9 E(85289): 2e-59
Smith-Waterman score: 2598; 99.7% identity (99.7% similar) in 389 aa overlap (77-465:1-388)
50 60 70 80 90 100
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
:::::::::::::::: :::::::::::::
XP_016 MNRPIQVKPADSESRG-DRKLFVGMLGKQQ
10 20
110 120 130 140 150 160
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
30 40 50 60 70 80
170 180 190 200 210 220
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
90 100 110 120 130 140
230 240 250 260 270 280
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
150 160 170 180 190 200
290 300 310 320 330 340
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
270 280 290 300 310 320
410 420 430 440 450 460
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
330 340 350 360 370 380
>>XP_011507416 (OMIM: 612678) PREDICTED: CUGBP Elav-like (388 aa)
initn: 2502 init1: 2502 opt: 2598 Z-score: 1188.0 bits: 228.9 E(85289): 2e-59
Smith-Waterman score: 2598; 99.7% identity (99.7% similar) in 389 aa overlap (77-465:1-388)
50 60 70 80 90 100
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
:::::::::::::::: :::::::::::::
XP_011 MNRPIQVKPADSESRG-DRKLFVGMLGKQQ
10 20
110 120 130 140 150 160
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
30 40 50 60 70 80
170 180 190 200 210 220
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
90 100 110 120 130 140
230 240 250 260 270 280
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
150 160 170 180 190 200
290 300 310 320 330 340
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
270 280 290 300 310 320
410 420 430 440 450 460
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
330 340 350 360 370 380
>>XP_006711204 (OMIM: 612678) PREDICTED: CUGBP Elav-like (388 aa)
initn: 2502 init1: 2502 opt: 2598 Z-score: 1188.0 bits: 228.9 E(85289): 2e-59
Smith-Waterman score: 2598; 99.7% identity (99.7% similar) in 389 aa overlap (77-465:1-388)
50 60 70 80 90 100
pF1KB7 HKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQ
:::::::::::::::: :::::::::::::
XP_006 MNRPIQVKPADSESRG-DRKLFVGMLGKQQ
10 20
110 120 130 140 150 160
pF1KB7 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS
30 40 50 60 70 80
170 180 190 200 210 220
pF1KB7 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYL
90 100 110 120 130 140
230 240 250 260 270 280
pF1KB7 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYSPVP
150 160 170 180 190 200
290 300 310 320 330 340
pF1KB7 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQP
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB7 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHV
270 280 290 300 310 320
410 420 430 440 450 460
pF1KB7 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
330 340 350 360 370 380
465 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:50:03 2016 done: Thu Nov 3 22:50:04 2016
Total Scan time: 11.010 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]