FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7005, 1259 aa
  1>>>pF1KB7005 1259 - 1259 aa - 1259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7844+/-0.00103; mu= 19.5649+/- 0.062
 mean_var=65.1509+/-12.772, 0's: 0 Z-trim(103.0): 24  B-trim: 0 in 0/51
 Lambda= 0.158896
 statistics sampled from 7215 (7218) to 7215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.222), width:  16
 Scan time:  4.700

The best scores are:                                      opt bits E(32554)
CCDS13704.1 TRAPPC10 gene_id:7109|Hs108|chr21      (1259) 8416 1938.9       0


>>CCDS13704.1 TRAPPC10 gene_id:7109|Hs108|chr21           (1259 aa)
 initn: 8416 init1: 8416 opt: 8416  Z-score: 10413.0  bits: 1938.9 E(32554):    0
Smith-Waterman score: 8416; 100.0% identity (100.0% similar) in 1259 aa overlap (1-1259:1-1259)

               10        20        30        40        50        60
pF1KB7 MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VDWLIVIVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDWLIVIVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRRE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 DLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 VGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 TSSLLASDHHLTEEERKHFCQEILDFASQPSDSPGHKIVLPMHSFAQLRDLHFDPSNAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TSSLLASDHHLTEEERKHFCQEILDFASQPSDSPGHKIVLPMHSFAQLRDLHFDPSNAVV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 HVGGVLCVEITMYSQMPVPVHVEQIVVNVHFSIEKNSYRKTAEWLTKHKTSNGIINFPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HVGGVLCVEITMYSQMPVPVHVEQIVVNVHFSIEKNSYRKTAEWLTKHKTSNGIINFPPE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB7 TAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSGVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSGVAL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB7 EEGAHVLRCSHVTLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFVLPHIYPIVQYDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEGAHVLRCSHVTLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFVLPHIYPIVQYDV
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB7 YSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB7 VYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGM
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB7 AEPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AEPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB7 QVCVQNLSELDFQLSDSYLVDTGDSTDLQLVPLNTQSQQPIYSKQSVFFVWELKWTEEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVCVQNLSELDFQLSDSYLVDTGDSTDLQLVPLNTQSQQPIYSKQSVFFVWELKWTEEPP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB7 PSLHCRFSVGFSPASEEQLSISLKPYTYEFKVENFFTLYNVKAEIFPPSGMEYCRTGSLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PSLHCRFSVGFSPASEEQLSISLKPYTYEFKVENFFTLYNVKAEIFPPSGMEYCRTGSLC
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB7 SLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAR
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KB7 ATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPD
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250         
pF1KB7 SSSLKSRGSVHSACSSEHKGLPMPRLQALPAGQVFNSSSGTQVLVIPSQDDHVLEVSVT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSSLKSRGSVHSACSSEHKGLPMPRLQALPAGQVFNSSSGTQVLVIPSQDDHVLEVSVT
             1210      1220      1230      1240      1250         




1259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:10:08 2016 done: Thu Nov  3 18:10:09 2016
 Total Scan time:  4.700 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]