Result of FASTA (ccds) for
pF1KB6998
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6998, 217 aa
1>>>pF1KB6998 217 - 217 aa - 217 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5602+/-0.000785; mu= 12.0401+/- 0.047
mean_var=61.8370+/-12.418, 0's: 0 Z-trim(107.3): 28 B-trim: 62 in 1/50
Lambda= 0.163098
statistics sampled from 9445 (9464) to 9445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.291), width: 16
Scan time: 2.170
The best scores are: opt bits E(32554)
CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17 ( 217) 1448 349.0 1.4e-96
CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17 ( 217) 1437 346.4 8.1e-96
CCDS11652.1 CSHL1 gene_id:1444|Hs108|chr17 ( 222) 1284 310.4 5.7e-85
CCDS11653.1 GH1 gene_id:2688|Hs108|chr17 ( 217) 1228 297.2 5.2e-81
CCDS11647.1 GH2 gene_id:2689|Hs108|chr17 ( 217) 1129 273.9 5.3e-74
CCDS11646.1 CSH2 gene_id:1443|Hs108|chr17 ( 167) 996 242.6 1.1e-64
CCDS45760.1 GH1 gene_id:2688|Hs108|chr17 ( 202) 837 205.2 2.4e-53
CCDS45759.1 CSHL1 gene_id:1444|Hs108|chr17 ( 139) 819 200.9 3.2e-52
CCDS82189.1 CSHL1 gene_id:1444|Hs108|chr17 ( 160) 819 200.9 3.7e-52
CCDS45758.1 GH2 gene_id:2689|Hs108|chr17 ( 202) 782 192.3 1.9e-49
CCDS42370.1 CSHL1 gene_id:1444|Hs108|chr17 ( 128) 774 190.3 4.6e-49
CCDS45757.1 GH2 gene_id:2689|Hs108|chr17 ( 245) 735 181.2 4.8e-46
CCDS11648.1 GH2 gene_id:2689|Hs108|chr17 ( 256) 732 180.5 8.2e-46
CCDS11654.1 GH1 gene_id:2688|Hs108|chr17 ( 177) 714 176.2 1.1e-44
CCDS42368.1 CSH2 gene_id:1443|Hs108|chr17 ( 122) 446 113.1 7.6e-26
CCDS4548.1 PRL gene_id:5617|Hs108|chr6 ( 227) 249 66.9 1.2e-11
>>CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17 (217 aa)
initn: 1448 init1: 1448 opt: 1448 Z-score: 1847.7 bits: 349.0 E(32554): 1.4e-96
Smith-Waterman score: 1448; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210
>>CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17 (217 aa)
initn: 1437 init1: 1437 opt: 1437 Z-score: 1833.7 bits: 346.4 E(32554): 8.1e-96
Smith-Waterman score: 1437; 99.5% identity (99.5% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS42 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210
>>CCDS11652.1 CSHL1 gene_id:1444|Hs108|chr17 (222 aa)
initn: 1292 init1: 957 opt: 1284 Z-score: 1638.9 bits: 310.4 E(32554): 5.7e-85
Smith-Waterman score: 1284; 90.1% identity (93.2% similar) in 222 aa overlap (1-217:1-222)
10 20 30 40 50
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEF---
:: ::::::::::::::::::::::::::::::::: .:::::::::::::::::::
CCDS11 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFKEAMLQAHRAHQLAIDTYQEFISS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 --EETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEP
:.:: :.::::::::::::::::::::: :::::::::::::::.:::::::: :::
CCDS11 WGMEAYITKEQKYSFLHDSQTSFCFSDSIPTSSNMEETQQKSNLELLHISLLLIESRLEP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 VRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTN
:::::: :.:::::::::::::::::::::::: :::::::::. ::: :::::::::::
CCDS11 VRFLRSTFTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTN
130 140 150 160 170 180
180 190 200 210
pF1KB6 SHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
::::::::::::::.:::::::::::::::::::::::::::
CCDS11 SHNHDALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210 220
>>CCDS11653.1 GH1 gene_id:2688|Hs108|chr17 (217 aa)
initn: 1228 init1: 1228 opt: 1228 Z-score: 1567.9 bits: 297.2 E(32554): 5.2e-81
Smith-Waterman score: 1228; 85.3% identity (94.9% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
:: ::::::::::.:::::::::..: :.:::::::.:::.::: ::::.::::::::.
CCDS11 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
::::.::::::.. :::.:::.::::::: :::::::::::::::::::.::::::.:::
CCDS11 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
:.:::.::: .:::. : :::::::::::::::::::: :::::.::::::::::::: :
CCDS11 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
190 200 210
>>CCDS11647.1 GH2 gene_id:2689|Hs108|chr17 (217 aa)
initn: 1129 init1: 1129 opt: 1129 Z-score: 1442.0 bits: 273.9 E(32554): 5.3e-74
Smith-Waterman score: 1129; 79.7% identity (92.6% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
:: ::::::::::.:::: ::::..: :.:::::::.:::.:.: .::: ::::::::.
CCDS11 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
:: :.::::::.. :::.:::.::::::: .:::::::::::::::::.::::::..::
CCDS11 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
:.:::.::: .:::. :. :::::::::::: :::::: :::::..:.::::::.::: :
CCDS11 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
130 140 150 160 170 180
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
190 200 210
>>CCDS11646.1 CSH2 gene_id:1443|Hs108|chr17 (167 aa)
initn: 991 init1: 991 opt: 996 Z-score: 1274.7 bits: 242.6 E(32554): 1.1e-64
Smith-Waterman score: 996; 93.4% identity (94.0% similar) in 166 aa overlap (1-165:1-166)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMG-RLEDGSRRTGQILKQTYSKFDTNSHNH
:::::::::::::::::::::::::::::::: :. : : :
CCDS11 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGVRVAPGVANPGTPLA
130 140 150 160
180 190 200 210
pF1KB6 DALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
>>CCDS45760.1 GH1 gene_id:2688|Hs108|chr17 (202 aa)
initn: 1131 init1: 837 opt: 837 Z-score: 1071.2 bits: 205.2 E(32554): 2.4e-53
Smith-Waterman score: 1105; 79.7% identity (88.0% similar) in 217 aa overlap (1-217:1-202)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
:: ::::::::::.:::::::::..: :.:::::::.:::.::: ::::.::::::
CCDS45 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEF---
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
. :::.:::.::::::: :::::::::::::::::::.::::::.:::
CCDS45 ------------NPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
:.:::.::: .:::. : :::::::::::::::::::: :::::.::::::::::::: :
CCDS45 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
110 120 130 140 150 160
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS45 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
170 180 190 200
>>CCDS45759.1 CSHL1 gene_id:1444|Hs108|chr17 (139 aa)
initn: 819 init1: 819 opt: 819 Z-score: 1050.9 bits: 200.9 E(32554): 3.2e-52
Smith-Waterman score: 819; 92.0% identity (95.6% similar) in 137 aa overlap (81-217:3-139)
60 70 80 90 100 110
pF1KB6 IDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIE
.::::: :::::::::::::::.:::::::
CCDS45 MAADSIPTSSNMEETQQKSNLELLHISLLLIE
10 20 30
120 130 140 150 160 170
pF1KB6 SWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYS
: ::::::::: :.:::::::::::::::::::::::: :::::::::. ::: ::::::
CCDS45 SRLEPVRFLRSTFTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYS
40 50 60 70 80 90
180 190 200 210
pF1KB6 KFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
:::::::::::::::::::.:::::::::::::::::::::::::::
CCDS45 KFDTNSHNHDALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF
100 110 120 130
>>CCDS82189.1 CSHL1 gene_id:1444|Hs108|chr17 (160 aa)
initn: 819 init1: 819 opt: 819 Z-score: 1049.9 bits: 200.9 E(32554): 3.7e-52
Smith-Waterman score: 844; 68.7% identity (70.5% similar) in 217 aa overlap (1-217:1-160)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
:: :::::::::::::::::::::
CCDS82 MAAGSRTSLLLAFALLCLPWLQEA------------------------------------
10 20
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
::::: :::::::::::::::.:::::::: ::::::::
CCDS82 ---------------------DSIPTSSNMEETQQKSNLELLHISLLLIESRLEPVRFLR
30 40 50 60
130 140 150 160 170 180
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
: :.:::::::::::::::::::::::: :::::::::. ::: ::::::::::::::::
CCDS82 STFTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHD
70 80 90 100 110 120
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
:::::::::.:::::::::::::::::::::::::::
CCDS82 ALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF
130 140 150 160
>>CCDS45758.1 GH2 gene_id:2689|Hs108|chr17 (202 aa)
initn: 1046 init1: 782 opt: 782 Z-score: 1001.2 bits: 192.3 E(32554): 1.9e-49
Smith-Waterman score: 1020; 74.7% identity (86.2% similar) in 217 aa overlap (1-217:1-202)
10 20 30 40 50 60
pF1KB6 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
:: ::::::::::.:::: ::::..: :.:::::::.:::.:.: .::: ::::::
CCDS45 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEF---
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
. :::.:::.::::::: .:::::::::::::::::.::::::..::
CCDS45 ------------NPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
:.:::.::: .:::. :. :::::::::::: :::::: :::::..:.::::::.::: :
CCDS45 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
110 120 130 140 150 160
190 200 210
pF1KB6 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS45 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
170 180 190 200
217 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:17:02 2016 done: Sat Nov 5 02:17:03 2016
Total Scan time: 2.170 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]