Result of FASTA (omim) for
pF1KB6996
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6996, 254 aa
1>>>pF1KB6996 254 - 254 aa - 254 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3195+/-0.000305; mu= 15.0166+/- 0.019
mean_var=71.7775+/-13.831, 0's: 0 Z-trim(116.9): 4 B-trim: 0 in 0/56
Lambda= 0.151384
statistics sampled from 28375 (28379) to 28375 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.333), width: 16
Scan time: 6.150
The best scores are: opt bits E(85289)
NP_001002755 (OMIM: 605711,608100) NFU1 iron-sulfu ( 254) 1708 381.7 6.8e-106
XP_016859297 (OMIM: 605711,608100) PREDICTED: NFU1 ( 230) 1541 345.2 6e-95
NP_056515 (OMIM: 605711,608100) NFU1 iron-sulfur c ( 230) 1541 345.2 6e-95
NP_001002756 (OMIM: 605711,608100) NFU1 iron-sulfu ( 113) 739 169.9 1.8e-42
>>NP_001002755 (OMIM: 605711,608100) NFU1 iron-sulfur cl (254 aa)
initn: 1708 init1: 1708 opt: 1708 Z-score: 2022.1 bits: 381.7 E(85289): 6.8e-106
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KB6 MAATARRGWGAAAVAAGLRRRFCHMLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAATARRGWGAAAVAAGLRRRFCHMLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
190 200 210 220 230 240
250
pF1KB6 VMDDESDEKEANSP
::::::::::::::
NP_001 VMDDESDEKEANSP
250
>>XP_016859297 (OMIM: 605711,608100) PREDICTED: NFU1 iro (230 aa)
initn: 1541 init1: 1541 opt: 1541 Z-score: 1825.6 bits: 345.2 E(85289): 6e-95
Smith-Waterman score: 1541; 100.0% identity (100.0% similar) in 230 aa overlap (25-254:1-230)
10 20 30 40 50 60
pF1KB6 MAATARRGWGAAAVAAGLRRRFCHMLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
::::::::::::::::::::::::::::::::::::
XP_016 MLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
10 20 30
70 80 90 100 110 120
pF1KB6 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
160 170 180 190 200 210
250
pF1KB6 VMDDESDEKEANSP
::::::::::::::
XP_016 VMDDESDEKEANSP
220 230
>>NP_056515 (OMIM: 605711,608100) NFU1 iron-sulfur clust (230 aa)
initn: 1541 init1: 1541 opt: 1541 Z-score: 1825.6 bits: 345.2 E(85289): 6e-95
Smith-Waterman score: 1541; 100.0% identity (100.0% similar) in 230 aa overlap (25-254:1-230)
10 20 30 40 50 60
pF1KB6 MAATARRGWGAAAVAAGLRRRFCHMLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
::::::::::::::::::::::::::::::::::::
NP_056 MLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
10 20 30
70 80 90 100 110 120
pF1KB6 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
160 170 180 190 200 210
250
pF1KB6 VMDDESDEKEANSP
::::::::::::::
NP_056 VMDDESDEKEANSP
220 230
>>NP_001002756 (OMIM: 605711,608100) NFU1 iron-sulfur cl (113 aa)
initn: 739 init1: 739 opt: 739 Z-score: 883.4 bits: 169.9 E(85289): 1.8e-42
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 113 aa overlap (142-254:1-113)
120 130 140 150 160 170
pF1KB6 VFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVA
::::::::::::::::::::::::::::::
NP_001 MDFFASGLPLVTEETPSGEAGSEEDDEVVA
10 20 30
180 190 200 210 220 230
pF1KB6 MIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFY
40 50 60 70 80 90
240 250
pF1KB6 IPEVEGVEQVMDDESDEKEANSP
:::::::::::::::::::::::
NP_001 IPEVEGVEQVMDDESDEKEANSP
100 110
254 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:59:41 2016 done: Fri Nov 4 09:59:42 2016
Total Scan time: 6.150 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]