FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6996, 254 aa
  1>>>pF1KB6996 254 - 254 aa - 254 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0834+/-0.0007; mu= 16.3297+/- 0.042
 mean_var=69.9902+/-13.616, 0's: 0 Z-trim(109.9): 5  B-trim: 2 in 1/50
 Lambda= 0.153305
 statistics sampled from 11215 (11218) to 11215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.345), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS33217.1 NFU1 gene_id:27247|Hs108|chr2          ( 254) 1708 386.3 1.1e-107
CCDS46315.1 NFU1 gene_id:27247|Hs108|chr2          ( 230) 1541 349.3 1.3e-96
CCDS42694.1 NFU1 gene_id:27247|Hs108|chr2          ( 113)  739 171.7 1.9e-43


>>CCDS33217.1 NFU1 gene_id:27247|Hs108|chr2               (254 aa)
 initn: 1708 init1: 1708 opt: 1708  Z-score: 2046.7  bits: 386.3 E(32554): 1.1e-107
Smith-Waterman score: 1708; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)

               10        20        30        40        50        60
pF1KB6 MAATARRGWGAAAVAAGLRRRFCHMLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAATARRGWGAAAVAAGLRRRFCHMLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
              190       200       210       220       230       240

              250    
pF1KB6 VMDDESDEKEANSP
       ::::::::::::::
CCDS33 VMDDESDEKEANSP
              250    

>>CCDS46315.1 NFU1 gene_id:27247|Hs108|chr2               (230 aa)
 initn: 1541 init1: 1541 opt: 1541  Z-score: 1847.7  bits: 349.3 E(32554): 1.3e-96
Smith-Waterman score: 1541; 100.0% identity (100.0% similar) in 230 aa overlap (25-254:1-230)

               10        20        30        40        50        60
pF1KB6 MAATARRGWGAAAVAAGLRRRFCHMLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
                               ::::::::::::::::::::::::::::::::::::
CCDS46                         MLKNPYTIKKQPLHQFVQRPLFPLPAAFYHPVRYMF
                                       10        20        30      

               70        80        90       100       110       120
pF1KB6 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFIT
         40        50        60        70        80        90      

              130       140       150       160       170       180
pF1KB6 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVAMIKELLDTR
        100       110       120       130       140       150      

              190       200       210       220       230       240
pF1KB6 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQ
        160       170       180       190       200       210      

              250    
pF1KB6 VMDDESDEKEANSP
       ::::::::::::::
CCDS46 VMDDESDEKEANSP
        220       230

>>CCDS42694.1 NFU1 gene_id:27247|Hs108|chr2               (113 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 893.4  bits: 171.7 E(32554): 1.9e-43
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 113 aa overlap (142-254:1-113)

             120       130       140       150       160       170 
pF1KB6 VFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSEEDDEVVA
                                     ::::::::::::::::::::::::::::::
CCDS42                               MDFFASGLPLVTEETPSGEAGSEEDDEVVA
                                             10        20        30

             180       190       200       210       220       230 
pF1KB6 MIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFY
               40        50        60        70        80        90

             240       250    
pF1KB6 IPEVEGVEQVMDDESDEKEANSP
       :::::::::::::::::::::::
CCDS42 IPEVEGVEQVMDDESDEKEANSP
              100       110   




254 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:59:40 2016 done: Fri Nov  4 09:59:41 2016
 Total Scan time:  2.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]