FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6991, 221 aa
  1>>>pF1KB6991 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6599+/-0.000653; mu= 12.1644+/- 0.040
 mean_var=152.6640+/-29.940, 0's: 0 Z-trim(116.9): 2  B-trim: 29 in 1/54
 Lambda= 0.103802
 statistics sampled from 17518 (17519) to 17518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.538), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS33021.1 MED29 gene_id:55588|Hs108|chr19        ( 221) 1487 232.8 1.3e-61


>>CCDS33021.1 MED29 gene_id:55588|Hs108|chr19             (221 aa)
 initn: 1487 init1: 1487 opt: 1487  Z-score: 1219.4  bits: 232.8 E(32554): 1.3e-61
Smith-Waterman score: 1487; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KB6 MLKSNGERRSRNALPAVYARKMAASQQQASAASSAAGVSGPSSAGGPGPQQQPQPPAQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLKSNGERRSRNALPAVYARKMAASQQQASAASSAAGVSGPSSAGGPGPQQQPQPPAQLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GPAQSGLLQQQQQDFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPAQSGLLQQQQQDFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRFDKCLEEFYALCDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QRFDKCLEEFYALCDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQ
              130       140       150       160       170       180

              190       200       210       220 
pF1KB6 YLAVIKAQISCAKDIHTALLDCANKVTGKTPAPPAGPGGTL
       :::::::::::::::::::::::::::::::::::::::::
CCDS33 YLAVIKAQISCAKDIHTALLDCANKVTGKTPAPPAGPGGTL
              190       200       210       220 




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:12:08 2016 done: Fri Nov  4 10:12:08 2016
 Total Scan time:  2.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]