FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6985, 219 aa
  1>>>pF1KB6985 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5523+/-0.000871; mu= 10.4614+/- 0.053
 mean_var=150.6971+/-30.001, 0's: 0 Z-trim(111.7): 18  B-trim: 91 in 1/52
 Lambda= 0.104477
 statistics sampled from 12537 (12552) to 12537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.386), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS6537.1 CHMP5 gene_id:51510|Hs108|chr9          ( 219) 1406 222.8 1.3e-58
CCDS56569.1 CHMP5 gene_id:51510|Hs108|chr9         ( 171) 1057 170.1 7.8e-43


>>CCDS6537.1 CHMP5 gene_id:51510|Hs108|chr9               (219 aa)
 initn: 1406 init1: 1406 opt: 1406  Z-score: 1165.5  bits: 222.8 E(32554): 1.3e-58
Smith-Waterman score: 1406; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB6 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDS
              130       140       150       160       170       180

              190       200       210         
pF1KB6 SYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS
       :::::::::::::::::::::::::::::::::::::::
CCDS65 SYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS
              190       200       210         

>>CCDS56569.1 CHMP5 gene_id:51510|Hs108|chr9              (171 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 882.5  bits: 170.1 E(32554): 7.8e-43
Smith-Waterman score: 1057; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB6 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDS
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS56 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAGWSSGG         
              130       140       150       160       170          

              190       200       210         
pF1KB6 SYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:24:04 2016 done: Fri Nov  4 10:24:05 2016
 Total Scan time:  2.140 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]