FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6981, 218 aa
  1>>>pF1KB6981 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3455+/-0.00103; mu= 13.1225+/- 0.062
 mean_var=63.8274+/-13.022, 0's: 0 Z-trim(102.7): 35  B-trim: 0 in 0/48
 Lambda= 0.160535
 statistics sampled from 7057 (7075) to 7057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.217), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(32554)
CCDS12441.1 SCN1B gene_id:6324|Hs108|chr19         ( 218) 1403 333.8 5.1e-92
CCDS46047.1 SCN1B gene_id:6324|Hs108|chr19         ( 268)  985 237.0 8.4e-63
CCDS8442.1 SCN3B gene_id:55800|Hs108|chr11         ( 215)  604 148.8 2.5e-36


>>CCDS12441.1 SCN1B gene_id:6324|Hs108|chr19              (218 aa)
 initn: 1403 init1: 1403 opt: 1403  Z-score: 1765.6  bits: 333.8 E(32554): 5.1e-92
Smith-Waterman score: 1403; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB6 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIY
              130       140       150       160       170       180

              190       200       210        
pF1KB6 CYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE
       ::::::::::::::::::::::::::::::::::::::
CCDS12 CYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE
              190       200       210        

>>CCDS46047.1 SCN1B gene_id:6324|Hs108|chr19              (268 aa)
 initn: 985 init1: 985 opt: 985  Z-score: 1241.0  bits: 237.0 E(32554): 8.4e-63
Smith-Waterman score: 985; 96.8% identity (98.1% similar) in 155 aa overlap (1-155:1-155)

               10        20        30        40        50        60
pF1KB6 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 CHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMIY
       :::::::::::::::::::::::::::::..   :                         
CCDS46 CHVYRLLFFENYEHNTSVVKKIHIEVVDKGESGAACPFTVTHRRARWRDRWQAVDRTGWL
              130       140       150       160       170       180

              190       200       210                              
pF1KB6 CYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE                      
                                                                   
CCDS46 CAWPANRPQQRAEGEGSSPSCPLQLWPLFLSSPRRGQSMPVPHRRSGYRTQLCHLCCMTS
              190       200       210       220       230       240

>>CCDS8442.1 SCN3B gene_id:55800|Hs108|chr11              (215 aa)
 initn: 553 init1: 313 opt: 604  Z-score: 765.6  bits: 148.8 E(32554): 2.5e-36
Smith-Waterman score: 604; 49.5% identity (72.9% similar) in 214 aa overlap (5-218:10-215)

                    10        20        30        40        50     
pF1KB6      MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFT
                :: .:    ::     :::: :::::: :  .:. :::: .: :..: : .
CCDS84 MPAFNRLFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVV
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB6 EWTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNH
       :: .: .: ..:. : .:.:   ..:    :.::. ::::   :::::.:: . ::: : 
CCDS84 EWFYRPEGGKDFL-IYEYRNGHQEVESP--FQGRLQWNGS---KDLQDVSITVLNVTLND
               70         80          90          100       110    

         120       130       140       150       160       170     
pF1KB6 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLV
       :: : :.: : . :: ..  ..... : ..:...:..:..:.:::::::.:.: ::.::.
CCDS84 SGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLL
          120       130       140       150       160       170    

         180       190       200       210        
pF1KB6 AEMIYCYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE
        ::::::.:.. : : :::::::.:::: ::.::: ..: : :
CCDS84 IEMIYCYRKVSKA-EEAAQENASDYLAIPSENKEN-SAVPVEE
          180        190       200        210     




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:46:07 2016 done: Fri Nov  4 10:46:07 2016
 Total Scan time:  1.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]