Result of FASTA (ccds) for
pF1KB6979
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6979, 218 aa
1>>>pF1KB6979 218 - 218 aa - 218 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6581+/-0.000641; mu= 9.1222+/- 0.039
mean_var=105.4225+/-20.560, 0's: 0 Z-trim(115.0): 17 B-trim: 0 in 0/51
Lambda= 0.124913
statistics sampled from 15533 (15550) to 15533 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.478), width: 16
Scan time: 2.130
The best scores are: opt bits E(32554)
CCDS12744.1 BAX gene_id:581|Hs108|chr19 ( 218) 1516 282.5 1.4e-76
CCDS12742.1 BAX gene_id:581|Hs108|chr19 ( 192) 1073 202.7 1.3e-52
CCDS12745.2 BAX gene_id:581|Hs108|chr19 ( 179) 1070 202.1 1.8e-52
CCDS77327.1 BAX gene_id:581|Hs108|chr19 ( 140) 996 188.7 1.5e-48
CCDS12743.1 BAX gene_id:581|Hs108|chr19 ( 143) 562 110.5 5.5e-25
>>CCDS12744.1 BAX gene_id:581|Hs108|chr19 (218 aa)
initn: 1516 init1: 1516 opt: 1516 Z-score: 1488.5 bits: 282.5 E(32554): 1.4e-76
Smith-Waterman score: 1516; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)
10 20 30 40 50 60
pF1KB6 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWVRLLKPPHPHHRALTTAPAPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWVRLLKPPHPHHRALTTAPAPPS
130 140 150 160 170 180
190 200 210
pF1KB6 LPPATPLGPWAFWSRSQWCPLPIFRSSDVVYNAFSLRV
::::::::::::::::::::::::::::::::::::::
CCDS12 LPPATPLGPWAFWSRSQWCPLPIFRSSDVVYNAFSLRV
190 200 210
>>CCDS12742.1 BAX gene_id:581|Hs108|chr19 (192 aa)
initn: 1073 init1: 1073 opt: 1073 Z-score: 1057.8 bits: 202.7 E(32554): 1.3e-52
Smith-Waterman score: 1073; 98.8% identity (98.8% similar) in 162 aa overlap (1-162:1-162)
10 20 30 40 50 60
pF1KB6 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWVRLLKPPHPHHRALTTAPAPPS
:::::::::::::::::::::::::::::::::::::: ::
CCDS12 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGV
130 140 150 160 170 180
190 200 210
pF1KB6 LPPATPLGPWAFWSRSQWCPLPIFRSSDVVYNAFSLRV
CCDS12 LTASLTIWKKMG
190
>>CCDS12745.2 BAX gene_id:581|Hs108|chr19 (179 aa)
initn: 1070 init1: 1070 opt: 1070 Z-score: 1055.4 bits: 202.1 E(32554): 1.8e-52
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB6 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWVRLLKPPHPHHRALTTAPAPPS
::::::::::::::::::::::::::::::::::::::
CCDS12 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWTVTIFVAGVLTASLTIWKKMG
130 140 150 160 170
190 200 210
pF1KB6 LPPATPLGPWAFWSRSQWCPLPIFRSSDVVYNAFSLRV
>>CCDS77327.1 BAX gene_id:581|Hs108|chr19 (140 aa)
initn: 996 init1: 996 opt: 996 Z-score: 984.9 bits: 188.7 E(32554): 1.5e-48
Smith-Waterman score: 996; 100.0% identity (100.0% similar) in 140 aa overlap (79-218:1-140)
50 60 70 80 90 100
pF1KB6 PVPQDASTKKLSECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWG
::::::::::::::::::::::::::::::
CCDS77 MIAAVDTDSPREVFFRVAADMFSDGNFNWG
10 20 30
110 120 130 140 150 160
pF1KB6 RVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWVRLLKPPHPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWVRLLKPPHPH
40 50 60 70 80 90
170 180 190 200 210
pF1KB6 HRALTTAPAPPSLPPATPLGPWAFWSRSQWCPLPIFRSSDVVYNAFSLRV
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 HRALTTAPAPPSLPPATPLGPWAFWSRSQWCPLPIFRSSDVVYNAFSLRV
100 110 120 130 140
>>CCDS12743.1 BAX gene_id:581|Hs108|chr19 (143 aa)
initn: 562 init1: 562 opt: 562 Z-score: 562.0 bits: 110.5 E(32554): 5.5e-25
Smith-Waterman score: 639; 68.5% identity (68.5% similar) in 162 aa overlap (1-162:1-113)
10 20 30 40 50 60
pF1KB6 MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLS
:::::::::::::::::::::::::::::
CCDS12 MDGSGEQPRGGGPTSSEQIMKTGALLLQG-------------------------------
10 20
70 80 90 100 110 120
pF1KB6 ECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
::::::::::::::::::::::::::::::::::::::::::
CCDS12 ------------------MIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKL
30 40 50 60 70
130 140 150 160 170 180
pF1KB6 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWVRLLKPPHPHHRALTTAPAPPS
:::::::::::::::::::::::::::::::::::::: ::
CCDS12 VLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGV
80 90 100 110 120 130
190 200 210
pF1KB6 LPPATPLGPWAFWSRSQWCPLPIFRSSDVVYNAFSLRV
CCDS12 LTASLTIWKKMG
140
218 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:49:33 2016 done: Fri Nov 4 10:49:33 2016
Total Scan time: 2.130 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]