FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6978, 245 aa
  1>>>pF1KB6978 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2640+/- 0.001; mu= 6.3117+/- 0.060
 mean_var=165.5526+/-35.948, 0's: 0 Z-trim(109.8): 94  B-trim: 0 in 0/52
 Lambda= 0.099680
 statistics sampled from 11085 (11176) to 11085 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.343), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS11903.1 RNF138 gene_id:51444|Hs108|chr18       ( 245) 1724 259.5 1.5e-69
CCDS11904.1 RNF138 gene_id:51444|Hs108|chr18       ( 151)  791 125.2 2.5e-29


>>CCDS11903.1 RNF138 gene_id:51444|Hs108|chr18            (245 aa)
 initn: 1724 init1: 1724 opt: 1724  Z-score: 1362.3  bits: 259.5 E(32554): 1.5e-69
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB6 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES
              190       200       210       220       230       240

            
pF1KB6 FQVNI
       :::::
CCDS11 FQVNI
            

>>CCDS11904.1 RNF138 gene_id:51444|Hs108|chr18            (151 aa)
 initn: 791 init1: 791 opt: 791  Z-score: 639.9  bits: 125.2 E(32554): 2.5e-29
Smith-Waterman score: 847; 61.6% identity (61.6% similar) in 245 aa overlap (1-245:1-151)

               10        20        30        40        50        60
pF1KB6 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGN
       :::::::::::::::::::::::::::::::::::::                       
CCDS11 MAEDLSAATSYTEDDFYCPVCQEVLKTPVRTTACQHV-----------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB6 VTRRERACPERALDLENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPN
                                                                   
CCDS11 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB6 FQISQDSVGNSNRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 -----------NRSETSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNH
                   40        50        60        70        80      

              190       200       210       220       230       240
pF1KB6 LFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES
         90       100       110       120       130       140      

            
pF1KB6 FQVNI
       :::::
CCDS11 FQVNI
        150 




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:20:47 2016 done: Sat Nov  5 18:20:47 2016
 Total Scan time:  1.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]