FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6973, 217 aa
  1>>>pF1KB6973 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1759+/-0.000576; mu= 12.0443+/- 0.035
 mean_var=102.8956+/-20.497, 0's: 0 Z-trim(116.0): 5  B-trim: 0 in 0/52
 Lambda= 0.126438
 statistics sampled from 16533 (16536) to 16533 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.508), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS7678.1 CALY gene_id:50632|Hs108|chr10          ( 217) 1493 281.4   3e-76
CCDS3376.1 NSG1 gene_id:27065|Hs108|chr4           ( 185)  378 78.0 4.4e-15


>>CCDS7678.1 CALY gene_id:50632|Hs108|chr10               (217 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1482.5  bits: 281.4 E(32554): 3e-76
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB6 MVKLGCSFSGKPGKDPGDQDGAAMDSVPLISPLDISQLQPPLPDQVVIKTQTEYQLSSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MVKLGCSFSGKPGKDPGDQDGAAMDSVPLISPLDISQLQPPLPDQVVIKTQTEYQLSSPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QQNFPDLEGQRLNCSHPEEGRRLPTARMIAFAMALLGCVLIMYKAIWYDQFTCPDGFLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QQNFPDLEGQRLNCSHPEEGRRLPTARMIAFAMALLGCVLIMYKAIWYDQFTCPDGFLLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HKICTPLTLEMYYTEMDPERHRSILAAIGAYPLSRKHGTETPAAWGDGYRAAKEERKGPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HKICTPLTLEMYYTEMDPERHRSILAAIGAYPLSRKHGTETPAAWGDGYRAAKEERKGPT
              130       140       150       160       170       180

              190       200       210       
pF1KB6 QAGAAAAATEPPGKPSAKAEKEAARKAAGSAAPPPAQ
       :::::::::::::::::::::::::::::::::::::
CCDS76 QAGAAAAATEPPGKPSAKAEKEAARKAAGSAAPPPAQ
              190       200       210       

>>CCDS3376.1 NSG1 gene_id:27065|Hs108|chr4                (185 aa)
 initn: 319 init1: 165 opt: 378  Z-score: 384.3  bits: 78.0 E(32554): 4.4e-15
Smith-Waterman score: 378; 38.8% identity (68.8% similar) in 170 aa overlap (1-165:1-164)

               10        20        30        40        50        60
pF1KB6 MVKLGCSFSGKPGKDPGDQDGAAMDSVPLISPLDISQLQPPLPDQVVIKTQTEYQLSSPD
       ::::: .:. :  :.:  .::  .:..::..:::..::: : ::.::.::.:::.   ::
CCDS33 MVKLGNNFAEKGTKQPLLEDG--FDTIPLMTPLDVNQLQFPPPDKVVVKTKTEYE---PD
               10        20          30        40        50        

               70         80          90         100       110     
pF1KB6 QQNFPDLEGQRLNCS-HPEEG--RRLPTARMIAFAMALLGCV--LIMYKAIWYDQFTCPD
       ...      :  . .    ::  .:. .. .. ::.:.: ::  :..::.  ::. .:::
CCDS33 RKKGKARPPQIAEFTVSITEGVTERFKVSVLVLFALAFLTCVVFLVVYKVYKYDR-ACPD
          60        70        80        90       100       110     

         120       130       140       150       160       170     
pF1KB6 GFLLRHKICTPLTLEMYYTEMDPERHRSILAAIGAYPLSRKHGTETPAAWGDGYRAAKEE
       ::.:..  : :  :: ::.:.:   .... ..:. : :...  :.. . :          
CCDS33 GFVLKNTQCIPEGLESYYAEQDSSAREKFYTVINHYNLAKQSITRSVSPWMSVLSEEKLS
          120       130       140       150       160       170    

         180       190       200       210       
pF1KB6 RKGPTQAGAAAAATEPPGKPSAKAEKEAARKAAGSAAPPPAQ
                                                 
CCDS33 EQETEAAEKSA                               
          180                                    




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:59:26 2016 done: Fri Nov  4 10:59:26 2016
 Total Scan time:  2.030 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]