Result of FASTA (omim) for
pF1KB6967
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6967, 215 aa
1>>>pF1KB6967 215 - 215 aa - 215 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6745+/-0.000265; mu= 9.0610+/- 0.017
mean_var=122.0315+/-25.095, 0's: 0 Z-trim(122.2): 14 B-trim: 389 in 1/53
Lambda= 0.116102
statistics sampled from 39884 (39919) to 39884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.468), width: 16
Scan time: 6.180
The best scores are: opt bits E(85289)
NP_653260 (OMIM: 608365) T-complex protein 10A hom ( 215) 1451 252.9 2.8e-67
XP_016866719 (OMIM: 187020) PREDICTED: T-complex p ( 211) 916 163.3 2.6e-40
XP_016866718 (OMIM: 187020) PREDICTED: T-complex p ( 269) 916 163.4 3.2e-40
XP_016866717 (OMIM: 187020) PREDICTED: T-complex p ( 285) 916 163.4 3.3e-40
NP_004601 (OMIM: 187020) T-complex protein 10A hom ( 326) 916 163.5 3.7e-40
XP_011534387 (OMIM: 187020) PREDICTED: T-complex p ( 329) 916 163.5 3.7e-40
XP_011534386 (OMIM: 187020) PREDICTED: T-complex p ( 329) 916 163.5 3.7e-40
XP_016866720 (OMIM: 187020) PREDICTED: T-complex p ( 390) 916 163.5 4.3e-40
XP_011534390 (OMIM: 187020) PREDICTED: T-complex p ( 278) 665 121.4 1.5e-27
XP_011534384 (OMIM: 187020) PREDICTED: T-complex p ( 335) 471 88.9 1e-17
XP_011534392 (OMIM: 187020) PREDICTED: T-complex p ( 257) 462 87.3 2.4e-17
NP_060921 (OMIM: 608393,609279,613676) centromere (1338) 202 44.3 0.0011
>>NP_653260 (OMIM: 608365) T-complex protein 10A homolog (215 aa)
initn: 1451 init1: 1451 opt: 1451 Z-score: 1328.8 bits: 252.9 E(85289): 2.8e-67
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
130 140 150 160 170 180
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
:::::::::::::::::::::::::::::::::::
NP_653 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
190 200 210
>>XP_016866719 (OMIM: 187020) PREDICTED: T-complex prote (211 aa)
initn: 916 init1: 916 opt: 916 Z-score: 844.6 bits: 163.3 E(85289): 2.6e-40
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
:::: .:::: :: :.:::: ::::: ::::
XP_016 MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
10 20 30
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
XP_016 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
:::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
XP_016 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
100 110 120 130 140 150
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::::.:.:. ::::: .::::::: :::::
XP_016 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKVTSETWVTLHWQHGKFRFR
160 170 180 190 200 210
>>XP_016866718 (OMIM: 187020) PREDICTED: T-complex prote (269 aa)
initn: 916 init1: 916 opt: 916 Z-score: 843.1 bits: 163.4 E(85289): 3.2e-40
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
:::: .:::: :: :.:::: ::::: ::::
XP_016 MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
10 20 30
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
XP_016 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
:::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
XP_016 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
100 110 120 130 140 150
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::::.:.:. ::::: .::::::: :::::
XP_016 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQA
160 170 180 190 200 210
XP_016 SQATTLQEQTAAARGAGEQDRSSSVLGSSEGGFLSRVQADEFASSAPDSAERQAGP
220 230 240 250 260
>>XP_016866717 (OMIM: 187020) PREDICTED: T-complex prote (285 aa)
initn: 916 init1: 916 opt: 916 Z-score: 842.8 bits: 163.4 E(85289): 3.3e-40
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
:::: .:::: :: :.:::: ::::: ::::
XP_016 MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
10 20 30
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
XP_016 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
:::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
XP_016 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
100 110 120 130 140 150
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::::.:.:. ::::: .::::::: :::::
XP_016 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQA
160 170 180 190 200 210
XP_016 SQATTLQEQTAAARGAGEQDRSSSVLGSSEGGFLSRVQADEFASSAPDSAERQFSVDINR
220 230 240 250 260 270
>>NP_004601 (OMIM: 187020) T-complex protein 10A homolog (326 aa)
initn: 916 init1: 916 opt: 916 Z-score: 842.0 bits: 163.5 E(85289): 3.7e-40
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
:::: .:::: :: :.:::: ::::: ::::
NP_004 MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
10 20 30
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
NP_004 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
:::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
NP_004 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
100 110 120 130 140 150
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::::.:.:. ::::: .::::::: :::::
NP_004 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQA
160 170 180 190 200 210
NP_004 SQATTLQEQTAAARGADRSSSVLGSSEGGFLSRVQADEFASSAPDSAERQNLPVNPPSSL
220 230 240 250 260 270
>>XP_011534387 (OMIM: 187020) PREDICTED: T-complex prote (329 aa)
initn: 916 init1: 916 opt: 916 Z-score: 841.9 bits: 163.5 E(85289): 3.7e-40
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
:::: .:::: :: :.:::: ::::: ::::
XP_011 MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
10 20 30
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
XP_011 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
:::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
XP_011 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
100 110 120 130 140 150
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::::.:.:. ::::: .::::::: :::::
XP_011 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQA
160 170 180 190 200 210
XP_011 SQATTLQEQTAAARGAGEQDRSSSVLGSSEGGFLSRVQADEFASSAPDSAERQNLPVNPP
220 230 240 250 260 270
>>XP_011534386 (OMIM: 187020) PREDICTED: T-complex prote (329 aa)
initn: 916 init1: 916 opt: 916 Z-score: 841.9 bits: 163.5 E(85289): 3.7e-40
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
:::: .:::: :: :.:::: ::::: ::::
XP_011 MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
10 20 30
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
XP_011 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
:::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
XP_011 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
100 110 120 130 140 150
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::::.:.:. ::::: .::::::: :::::
XP_011 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQA
160 170 180 190 200 210
XP_011 SQATTLQEQTAAARGAGEQDRSSSVLGSSEGGFLSRVQADEFASSAPDSAERQNLPVNPP
220 230 240 250 260 270
>>XP_016866720 (OMIM: 187020) PREDICTED: T-complex prote (390 aa)
initn: 916 init1: 916 opt: 916 Z-score: 840.9 bits: 163.5 E(85289): 4.3e-40
Smith-Waterman score: 916; 75.8% identity (87.1% similar) in 186 aa overlap (28-213:1-186)
10 20 30 40 50 60
pF1KB6 MLAGQLEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNTGEMPPLQQQIIRLHQE
:::: .:::: :: :.:::: ::::: ::::
XP_016 MEKTPAAAEVPREDSNAGEMPSLQQQITSLHQE
10 20 30
70 80 90 100 110 120
pF1KB6 LGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSAASPHAGQESHTL
::::.:::::.: ::.::.::::.:: ::::.::.:: :.:.: :: :::::::.:::::
XP_016 LGRQQSLWADIHRKLQSHMDALRKQNRELREELRGLQRQQWEAGKKPAASPHAGRESHTL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKT
:::::::::: :::::.: :::::.:.::::::::: :::. ::::::::: :::.: ::
XP_016 ALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKT
100 110 120 130 140 150
190 200 210
pF1KB6 PPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::::.:.:. ::::: .::::::: :::::
XP_016 PPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQA
160 170 180 190 200 210
XP_016 SQATTLQEQTAAARGADRSSSVLGSSEGGFLSRVQADEFASSAPDSAERQVEKFYPNGSK
220 230 240 250 260 270
>>XP_011534390 (OMIM: 187020) PREDICTED: T-complex prote (278 aa)
initn: 665 init1: 665 opt: 665 Z-score: 615.7 bits: 121.4 E(85289): 1.5e-27
Smith-Waterman score: 665; 76.3% identity (88.1% similar) in 135 aa overlap (79-213:1-135)
50 60 70 80 90 100
pF1KB6 PLQQQIIRLHQELGRQKSLWADVHGKLRSHIDALREQNMELREKLRALQLQRWKARKKSA
.::::.:: ::::.::.:: :.:.: :: :
XP_011 MDALRKQNRELREELRGLQRQQWEAGKKPA
10 20 30
110 120 130 140 150 160
pF1KB6 ASPHAGQESHTLALEPAFGKISPLSADEETIPKYAGHKNQSATLLGQRSSSNNSAPPKPM
::::::.::::::::::::::: :::::.: :::::.:.::::::::: :::. ::::::
XP_011 ASPHAGRESHTLALEPAFGKISHLSADEDTTPKYAGRKSQSATLLGQRWSSNHLAPPKPM
40 50 60 70 80 90
170 180 190 200 210
pF1KB6 SLKIERISSWKTPPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV
::: :::.: ::::::.:.:. ::::: .::::::: :::::
XP_011 SLKTERINSGKTPPQEDREKSPPGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSP
100 110 120 130 140 150
XP_011 QNSGGRKSPVQASQATTLQEQTAAARGAGEQDRSSSVLGSSEGGFLSRVQADEFASSAPD
160 170 180 190 200 210
>>XP_011534384 (OMIM: 187020) PREDICTED: T-complex prote (335 aa)
initn: 467 init1: 467 opt: 471 Z-score: 439.0 bits: 88.9 E(85289): 1e-17
Smith-Waterman score: 471; 73.1% identity (84.6% similar) in 104 aa overlap (113-213:89-192)
90 100 110 120 130
pF1KB6 REQNMELREKLRALQLQRWKARKKSAASPHAGQES---HTLALEPAFGKISPLSADEETI
::.:. . ::::::::::: :::::.:
XP_011 PLGGAGKKKLSQGCEDRGPLPTSTETVPIPAGKEQPGIRLLALEPAFGKISHLSADEDTT
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB6 PKYAGHKNQSATLLGQRSSSNNSAPPKPMSLKIERISSWKTPPQENRDKNLSRRRQDRRA
:::::.:.::::::::: :::. ::::::::: :::.: ::::::.:.:. :::::
XP_011 PKYAGRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKTPPQEDREKSPPGRRQDRSP
120 130 140 150 160 170
200 210
pF1KB6 TPTGRPTPCAERRGGV
.::::::: :::::
XP_011 APTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQASQATTLQEQTAAARGAGEQ
180 190 200 210 220 230
215 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:10:04 2016 done: Fri Nov 4 11:10:05 2016
Total Scan time: 6.180 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]