FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6963, 214 aa
  1>>>pF1KB6963 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8187+/-0.00105; mu= 1.2506+/- 0.061
 mean_var=304.2051+/-64.873, 0's: 0 Z-trim(110.8): 133  B-trim: 4 in 1/52
 Lambda= 0.073534
 statistics sampled from 11742 (11860) to 11742 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.364), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS6651.1 OSTF1 gene_id:26578|Hs108|chr9          ( 214) 1443 166.3 1.3e-41


>>CCDS6651.1 OSTF1 gene_id:26578|Hs108|chr9               (214 aa)
 initn: 1443 init1: 1443 opt: 1443  Z-score: 860.4  bits: 166.3 E(32554): 1.3e-41
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB6 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA
              130       140       150       160       170       180

              190       200       210    
pF1KB6 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
       ::::::::::::::::::::::::::::::::::
CCDS66 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD
              190       200       210    




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:15:29 2016 done: Fri Nov  4 11:15:29 2016
 Total Scan time:  1.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]