FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6955, 212 aa
  1>>>pF1KB6955 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0439+/-0.000745; mu= 15.4859+/- 0.045
 mean_var=73.5088+/-14.629, 0's: 0 Z-trim(109.8): 50  B-trim: 104 in 1/50
 Lambda= 0.149591
 statistics sampled from 11112 (11162) to 11112 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.343), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS9716.1 CDKN3 gene_id:1033|Hs108|chr14          ( 212) 1448 321.2 3.1e-88
CCDS81804.1 CDKN3 gene_id:1033|Hs108|chr14         ( 203) 1267 282.1 1.7e-76
CCDS45109.1 CDKN3 gene_id:1033|Hs108|chr14         ( 172) 1103 246.6 6.8e-66


>>CCDS9716.1 CDKN3 gene_id:1033|Hs108|chr14               (212 aa)
 initn: 1448 init1: 1448 opt: 1448  Z-score: 1697.7  bits: 321.2 E(32554): 3.1e-88
Smith-Waterman score: 1448; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB6 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
              130       140       150       160       170       180

              190       200       210  
pF1KB6 QTIKQYNYLHEFRDKLAAHLSSRDSQSRSVSR
       ::::::::::::::::::::::::::::::::
CCDS97 QTIKQYNYLHEFRDKLAAHLSSRDSQSRSVSR
              190       200       210  

>>CCDS81804.1 CDKN3 gene_id:1033|Hs108|chr14              (203 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1486.8  bits: 282.1 E(32554): 1.7e-76
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB6 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MKPPSSIQTSEFDSSDEEPIEDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EIMEELTTCLKNYRKTLIHCYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAI
              130       140       150       160       170       180

              190       200       210  
pF1KB6 QTIKQYNYLHEFRDKLAAHLSSRDSQSRSVSR
       ::::                            
CCDS81 QTIKDLPTSQFLPQSVLGMDPLT         
              190       200            

>>CCDS45109.1 CDKN3 gene_id:1033|Hs108|chr14              (172 aa)
 initn: 1154 init1: 1103 opt: 1103  Z-score: 1296.5  bits: 246.6 E(32554): 6.8e-66
Smith-Waterman score: 1103; 100.0% identity (100.0% similar) in 162 aa overlap (51-212:11-172)

               30        40        50        60        70        80
pF1KB6 EDEQTPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCT
                                     ::::::::::::::::::::::::::::::
CCDS45                     MKPPSSIQTSCKFKDVRRNVQKDTEELKSCGIQDIFVFCT
                                   10        20        30        40

               90       100       110       120       130       140
pF1KB6 RGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHC
               50        60        70        80        90       100

              150       160       170       180       190       200
pF1KB6 YGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRDKLAAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRDKLAAHL
              110       120       130       140       150       160

              210  
pF1KB6 SSRDSQSRSVSR
       ::::::::::::
CCDS45 SSRDSQSRSVSR
              170  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:20:12 2016 done: Sat Nov  5 18:20:12 2016
 Total Scan time:  1.730 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]