Result of FASTA (omim) for
pF1KB6951
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6951, 212 aa
1>>>pF1KB6951 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0574+/-0.000358; mu= 14.8440+/- 0.022
mean_var=59.7030+/-11.518, 0's: 0 Z-trim(114.1): 20 B-trim: 36 in 1/54
Lambda= 0.165988
statistics sampled from 23806 (23826) to 23806 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.279), width: 16
Scan time: 4.150
The best scores are: opt bits E(85289)
NP_060048 (OMIM: 611757) ropporin-1A isoform a [Ho ( 212) 1400 343.3 1.7e-94
XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 1400 343.3 1.7e-94
XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 1400 343.3 1.7e-94
NP_001304703 (OMIM: 611757) ropporin-1A isoform a ( 212) 1400 343.3 1.7e-94
NP_001304704 (OMIM: 611757) ropporin-1A isoform b ( 120) 796 198.6 3.6e-51
NP_001188395 (OMIM: 611756) ropporin-1-like protei ( 230) 540 137.4 1.8e-32
NP_114122 (OMIM: 611756) ropporin-1-like protein [ ( 230) 540 137.4 1.8e-32
XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1- ( 220) 522 133.1 3.4e-31
XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 522 133.1 3.9e-31
XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 522 133.1 3.9e-31
XP_016865435 (OMIM: 611756) PREDICTED: ropporin-1- ( 232) 521 132.9 4.2e-31
>>NP_060048 (OMIM: 611757) ropporin-1A isoform a [Homo s (212 aa)
initn: 1400 init1: 1400 opt: 1400 Z-score: 1817.6 bits: 343.3 E(85289): 1.7e-94
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KB6 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
::::::::::::::::::::::::::::::::
NP_060 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa)
initn: 1400 init1: 1400 opt: 1400 Z-score: 1817.6 bits: 343.3 E(85289): 1.7e-94
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KB6 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
::::::::::::::::::::::::::::::::
XP_011 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa)
initn: 1400 init1: 1400 opt: 1400 Z-score: 1817.6 bits: 343.3 E(85289): 1.7e-94
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KB6 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
::::::::::::::::::::::::::::::::
XP_011 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>NP_001304703 (OMIM: 611757) ropporin-1A isoform a [Hom (212 aa)
initn: 1400 init1: 1400 opt: 1400 Z-score: 1817.6 bits: 343.3 E(85289): 1.7e-94
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
130 140 150 160 170 180
190 200 210
pF1KB6 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
::::::::::::::::::::::::::::::::
NP_001 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
190 200 210
>>NP_001304704 (OMIM: 611757) ropporin-1A isoform b [Hom (120 aa)
initn: 796 init1: 796 opt: 796 Z-score: 1039.6 bits: 198.6 E(85289): 3.6e-51
Smith-Waterman score: 796; 100.0% identity (100.0% similar) in 120 aa overlap (93-212:1-120)
70 80 90 100 110 120
pF1KB6 NRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKF
::::::::::::::::::::::::::::::
NP_001 MWKVVNLPTDLFNSVMNVGRFTEEIEWLKF
10 20 30
130 140 150 160 170 180
pF1KB6 LALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHVSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHVSR
40 50 60 70 80 90
190 200 210
pF1KB6 MLNYMEQEVIGPDGIITVNDFTQNPRVQLE
::::::::::::::::::::::::::::::
NP_001 MLNYMEQEVIGPDGIITVNDFTQNPRVQLE
100 110 120
>>NP_001188395 (OMIM: 611756) ropporin-1-like protein [H (230 aa)
initn: 540 init1: 314 opt: 540 Z-score: 704.0 bits: 137.4 E(85289): 1.8e-32
Smith-Waterman score: 540; 39.8% identity (72.3% similar) in 206 aa overlap (10-212:15-220)
10 20 30 40 50
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
NP_001 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . .... :: :::.::.: . .. .: : :: . :: . :......
NP_001 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
NP_001 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KB6 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE
..: .. .: ..... . .:.: ..:: : ::
NP_001 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
190 200 210 220 230
>>NP_114122 (OMIM: 611756) ropporin-1-like protein [Homo (230 aa)
initn: 540 init1: 314 opt: 540 Z-score: 704.0 bits: 137.4 E(85289): 1.8e-32
Smith-Waterman score: 540; 39.8% identity (72.3% similar) in 206 aa overlap (10-212:15-220)
10 20 30 40 50
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
NP_114 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . .... :: :::.::.: . .. .: : :: . :: . :......
NP_114 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
NP_114 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KB6 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE
..: .. .: ..... . .:.: ..:: : ::
NP_114 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
190 200 210 220 230
>>XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1-like (220 aa)
initn: 517 init1: 314 opt: 522 Z-score: 681.0 bits: 133.1 E(85289): 3.4e-31
Smith-Waterman score: 522; 41.1% identity (74.6% similar) in 185 aa overlap (10-192:15-199)
10 20 30 40 50
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_016 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . .... :: :::.::.: . .. .: : :: . :: . :......
XP_016 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
XP_016 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KB6 EISASHVSRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
..: .. .: .....:
XP_016 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLVAISEES
190 200 210 220
>>XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa)
initn: 517 init1: 314 opt: 522 Z-score: 680.0 bits: 133.1 E(85289): 3.9e-31
Smith-Waterman score: 522; 41.1% identity (74.6% similar) in 185 aa overlap (10-192:15-199)
10 20 30 40 50
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . .... :: :::.::.: . .. .: : :: . :: . :......
XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KB6 EISASHVSRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
..: .. .: .....:
XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP
190 200 210 220 230 240
>>XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa)
initn: 517 init1: 314 opt: 522 Z-score: 680.0 bits: 133.1 E(85289): 3.9e-31
Smith-Waterman score: 522; 41.1% identity (74.6% similar) in 185 aa overlap (10-192:15-199)
10 20 30 40 50
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
:::::: .::.:.:::::.:: :...:.: :: :::::. ::..:
XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
: . .... :: :::.::.: . .. .: : :: . :: . :......
XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:.
XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
130 140 150 160 170 180
180 190 200 210
pF1KB6 EISASHVSRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
..: .. .: .....:
XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP
190 200 210 220 230 240
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:25:52 2016 done: Fri Nov 4 11:25:53 2016
Total Scan time: 4.150 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]