FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6951, 212 aa
  1>>>pF1KB6951 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9943+/-0.000735; mu= 14.9127+/- 0.044
 mean_var=56.6969+/-11.123, 0's: 0 Z-trim(107.6): 11  B-trim: 65 in 1/51
 Lambda= 0.170331
 statistics sampled from 9663 (9668) to 9663 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.297), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3          ( 212) 1400 351.8 1.8e-97
CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3       ( 212) 1345 338.3 2.1e-93
CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5         ( 230)  540 140.5   8e-34


>>CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3               (212 aa)
 initn: 1400 init1: 1400 opt: 1400  Z-score: 1863.4  bits: 351.8 E(32554): 1.8e-97
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
              130       140       150       160       170       180

              190       200       210  
pF1KB6 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
       ::::::::::::::::::::::::::::::::
CCDS30 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
              190       200       210  

>>CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3            (212 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1790.4  bits: 338.3 E(32554): 2.1e-93
Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB6 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA
       :::::::::::::::::::::::::::.::::::::.:::::::::::::::::::::::
CCDS33 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV
       :::::::::::::::::::::::::::::::: ::::::::::::::::.::::: ::::
CCDS33 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV
              130       140       150       160       170       180

              190       200       210  
pF1KB6 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE
       ::::::.:::::::::.:::::::::::: ::
CCDS33 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE
              190       200       210  

>>CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5              (230 aa)
 initn: 540 init1: 314 opt: 540  Z-score: 720.7  bits: 140.5 E(32554): 8e-34
Smith-Waterman score: 540; 39.8% identity (72.3% similar) in 206 aa overlap (10-212:15-220)

                    10        20        30        40        50     
pF1KB6      MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRER
                     :::::: .::.:.:::::.:: :...:.: :: :::::.  ::..:
CCDS38 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
               10        20        30        40        50        60

          60          70        80        90       100       110   
pF1KB6 SERVALCNRAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF
        :  .  ....  ::  :::.::.:   .  ..  .: : :: . :: . :......   
CCDS38 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB6 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDG
        ..:.:..::::.:: :: ... .:: .::.:. : .::  ::::.::...: :.:..:.
CCDS38 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
              130       140       150       160       170       180

           180       190        200       210            
pF1KB6 EISASHVSRMLNYMEQEVIG-PDGIITVNDFTQNPRVQLE          
       ..:  ..  .:  ..... .  .:.: ..::    :  ::          
CCDS38 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
              190       200       210       220       230




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:25:52 2016 done: Fri Nov  4 11:25:52 2016
 Total Scan time:  1.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]