FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6935, 207 aa
  1>>>pF1KB6935 207 - 207 aa - 207 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5450+/-0.000617; mu= 13.3092+/- 0.037
 mean_var=78.3463+/-15.909, 0's: 0 Z-trim(112.7): 3  B-trim: 0 in 0/54
 Lambda= 0.144899
 statistics sampled from 13386 (13387) to 13386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.411), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS7660.2 MGMT gene_id:4255|Hs108|chr10           ( 238) 1420 305.4 1.8e-83


>>CCDS7660.2 MGMT gene_id:4255|Hs108|chr10                (238 aa)
 initn: 1420 init1: 1420 opt: 1420  Z-score: 1611.9  bits: 305.4 E(32554): 1.8e-83
Smith-Waterman score: 1420; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:32-238)

                                             10        20        30
pF1KB6                               MDKDCEMKRTTLDSPLGKLELSGCEQGLHE
                                     ::::::::::::::::::::::::::::::
CCDS76 LGQPAPLERFASRRPQVLAVRTVCDLVLGKMDKDCEMKRTTLDSPLGKLELSGCEQGLHE
              10        20        30        40        50        60 

               40        50        60        70        80        90
pF1KB6 IKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQ
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KB6 QESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVC
             130       140       150       160       170       180 

              160       170       180       190       200       
pF1KB6 SSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SSGAVGNYSGGLAVKEWLLAHEGHRLGKPGLGGSSGLAGAWLKGAGATSGSPPAGRN
             190       200       210       220       230        




207 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:49:36 2016 done: Fri Nov  4 11:49:36 2016
 Total Scan time:  1.980 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]